YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95105530
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.91
Transmembrane Helix	63	84	0.90
Cytoplasmic	85	93	0.86
Transmembrane Helix	94	112	0.92
Non-Cytoplasmic	113	122	0.72
Transmembrane Helix	123	142	0.95
Cytoplasmic	143	160	0.89
Transmembrane Helix	161	181	0.95
Non-Cytoplasmic	182	192	0.90
Transmembrane Helix	193	214	0.92
Cytoplasmic	215	226	0.86
Transmembrane Helix	227	246	0.93
Non-Cytoplasmic	247	257	0.72
Transmembrane Helix	258	278	0.95
Cytoplasmic	279	298	0.90
Transmembrane Helix	299	328	0.82
Non-Cytoplasmic	329	348	0.78
Transmembrane Helix	349	371	0.71
Cytoplasmic	372	382	0.67
Transmembrane Helix	383	405	0.91
Non-Cytoplasmic	406	412	0.64
Transmembrane Helix	413	434	0.39
Cytoplasmic	435	442	0.47
Transmembrane Helix	443	466	0.73
Non-Cytoplasmic	467	856	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRHFPINDQ SLLPAHFGFW PGNSTTPGEV SNRVFSPKIP VVCRKLHSKQ PFGMFKGENA  60
   61 MNYAFSTFLI EAIIIIFFIK VVSIALRPFR QPRIVSEIIG GMMIGPSMFG GIRNFNYYLF 120
  121 PPIANYICAN IGLMGFFYFL FLTAAKTDVG AIGKAPRKHK YIAAIGVIVP IICVGSVGMA 180
  181 MRDQMDENLQ KPSSIGGVVF ALSFTSFPVI YTVLRDMNLL NSEVGKFAMS VALLGDMAGV 240
  241 YVIVIFEAMT HADVGGAYSV FWFLVSVVIF AAFMLLVVRR AFDWIVSQTP EGTLVNQNYI 300
  301 VMILMGVLAS CFLTDMFGLS IAVGPIWLGL LVPHGPPLGS TLAVRSETFI YEFLMPFTYA 360
  361 LVGQGTNIHF LRDETWRNQL SPLFYMTVVG FITKFLSTAF AALFFKVPAR ESITLGLMMN 420
  421 LRGQMDLLVY LHWIDKRIVG FPGYTVMVLH TVVVTAVTTP LINFFYDPTR PYRSSKHRTI 480
  481 QHTPQNTEMG LVLAVSDHET LSGLITFLDF AYPTKSSPLS IFAVQLVELA GRATPLFIDH 540
  541 EQRKEEEEEE YEEEEEEPER KQSGRIDQVQ SAFKLYEEKR NECVTLRSYT AHAPKRLMYQ 600
  601 DICELALGKK TAFILLPYQK ERLEDAAPTE LRDSGMLSVN ADVLEHTPCS VCIYFDKGRL 660
  661 KNAVVRLSMD LQHSTNSIRM RQETYRFVVL FLGGADNREA LHLADRMSTN PDVTLTVIRF 720
  721 LSYNHEGEDE REKKLDDGVV TWFWVKNESN ERVSYKEVVV KNGAETLAAI QAMNVNDYDL 780
  781 WITGRREGIN PKILEGLSTW SEDHQLGVIG DTVAASVFAS EGSVLVVQQQ VRNQKGGDGF 840
  841 LNGKFDYKRF LSPWSH