YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.95
Transmembrane Helix	37	58	0.91
Cytoplasmic	59	67	0.88
Transmembrane Helix	68	87	0.94
Non-Cytoplasmic	88	98	0.83
Transmembrane Helix	99	121	0.82
Cytoplasmic	122	132	0.82
Transmembrane Helix	133	155	0.91
Non-Cytoplasmic	156	167	0.89
Transmembrane Helix	168	190	0.91
Cytoplasmic	191	202	0.91
Transmembrane Helix	203	225	0.86
Non-Cytoplasmic	226	232	0.86
Transmembrane Helix	233	254	0.92
Cytoplasmic	255	269	0.86
Transmembrane Helix	270	289	0.84
Non-Cytoplasmic	290	291	0.42
Transmembrane Helix	292	312	0.62
Cytoplasmic	313	322	0.41
Transmembrane Helix	323	342	0.57
Non-Cytoplasmic	343	353	0.67
Transmembrane Helix	354	376	0.89
Cytoplasmic	377	414	0.83
Transmembrane Helix	415	437	0.93
Non-Cytoplasmic	438	811	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLVNGTIP AMKCPKNVAM MKTTSNGVFD GESPLDFAFP LVILQICLVV AVTRSLAFLL  60
   61 RPMRQPRVVA EIIGGILLGP SALGRITSYK NSIFPARSLT VLDTLANLGL LLFLFLVGLE 120
  121 IDLTSLRRTG KKAISIAAAG MLLPFGMGIV TSFAFPEASS SGDNSKVLPF IIFMGVALSI 180
  181 TAFGVLARIL AELKLLTTDL GRISMNAAAI NDVAAWVLLA LAVSLSGDRN SPLVPLWVLL 240
  241 SGIAFVIACF LIVPRIFKFI SRRCPEGEPI GEMYVCVALC AVLLAGFATD AIGIHAIFGA 300
  301 FVMGVLFPKG HFSDAIVEKI EDLVMGLLLP LYFVMSGLKT DITTIQGVKS WGRLALVIVT 360
  361 ACFGKIVGTV SVALLCKVRL RESVVLGVLM NTKGLVELIV LNIGKDRKVL SDQTFAIMVL 420
  421 MAIFTTFITT PIVLALYKPS ETTQTHSSVS YKNRKHRRKI ENDEEGEKMQ QLKVLVCLQS 480
  481 SKDIDPMMKI MEATRGSNET KERFCVYVMH LTQLSERPSS IRMVQKVRSN GLPFWNKKRE 540
  541 NSSAVTVAFE ASSKLSSVSV RSVTAISPLS TIHEDICSSA DSKCTAFVIL PFHKQWRSLE 600
  601 KEFETVRSEY QGINKRVLEN SPCSVGILVD RGLGDNNSPV ASSNFSLSVN VLFFGGCDDR 660
  661 EALVYGLRMA EHPGVNLTVV VISGPESARF DRLEAQETSL CSLDEQFLAA IKKRANAARF 720
  721 EERTVNSTEE VVEIIRQFYE CDILLVGKSS KGPMVSRLPV MKIECPELGP VGNLIVSNEI 780
  781 STSVSVLVVQ QYTGKGPSVV GSVSVPVVET P