YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94991211, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGLIAQIEK GKPFFEKISR NIYLRAIRDG FIAGMPVILF SSIFILIAYV PNAWGFHWSK  60
   61 DIENLLMTPY NYSMGILGLF VAGTTAKALT DSMNRSLPST NQINFMSTML AAIVGFLLMA 120
  121 ANPAKEGGFL TGFMGTKGLL TAFIAAFITV NVYKTCVKNN VTIRMPEEVP PNISQVFKDL 180
  181 IPFTLSVVLL YVIELIVHST LGVNVAESIG KLLAPLFQAA DGYVGITIIF GAFAFFWFVG 240
  241 IHGPSIVEPA IAAITYANAE TNLQLLQAGE HADKILTSGT QMFIVTMGGT GATLVVPFMF 300
  301 MWLTKSKRNK AIGRASVVPT FFGVNEPILF GAPLVLNPIF FIPFILAPIV NVWIFKFFID 360
  361 TLGMNSFTAN LPWTTPAPLG LILGTNFQVL AFILAALLIV VDVIIYYPFL KIYDEQILAE 420
  421 EAAGTNSSDA LKEKVAANFD TKKADAILEK SAAKETKEIT DQTNVLVLCA GGGTSGLLAN 480
  481 ALNKAAKEYG APVTAAAGSY GAHREILPQY QLVILAPQVA SNYEDMKVET DKLDIKLAKT 540
  541 EGAQYIKLTR DGQGALDFVK EQMEK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	50	0.94
Non-Cytoplasmic	51	69	0.86
Transmembrane Helix	70	90	0.88
Cytoplasmic	91	102	0.84
Transmembrane Helix	103	121	0.95
Non-Cytoplasmic	122	132	0.76
Transmembrane Helix	133	155	0.69
Cytoplasmic	156	218	0.64
Transmembrane Helix	219	241	0.87
Non-Cytoplasmic	242	281	0.74
Transmembrane Helix	282	304	0.90
Cytoplasmic	305	326	0.59
Transmembrane Helix	327	359	0.70
Non-Cytoplasmic	360	378	0.50
Transmembrane Helix	379	410	0.72
Cytoplasmic	411	565	0.72