YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89191850, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPAGLAAAA AGTPRLPSKR RIPVSQPGMA DPHQLFDDTS SAQSRGYGAQ RAPGGLSYPA  60
   61 ASPTPHAAFL ADPVSNMAMA YGSSLAAQGK ELVDKNIDRF IPITKLKYYF AVDTMYVGRK 120
  121 LGLLFFPYLH QDWEVQYQQD TPVAPRFDVN APDLYIPAMA FITYVLVAGL ALGTQDRFSP 180
  181 DLLGLQASSA LAWLTLEVLA ILLSLYLVTV NTDLTTIDLV AFLGYKYVGM IGGVLMGLLF 240
  241 GKIGYYLVLG WCCVAIFVFM IRTLRLKILA DAAAEGVPVR GARNQLRMYL TMAVAAAQPM 300
  301 LMYWLTFHLV R

Type	Start	End	Confidence
Cytoplasmic	1	153	0.84
Transmembrane Helix	154	174	0.89
Non-Cytoplasmic	175	188	0.74
Transmembrane Helix	189	210	0.90
Cytoplasmic	211	218	0.70
Transmembrane Helix	219	240	0.77
Non-Cytoplasmic	241	246	0.62
Transmembrane Helix	247	266	0.92
Cytoplasmic	267	285	0.95
Transmembrane Helix	286	307	0.91
Non-Cytoplasmic	308	311	0.84