YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4L_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHSSWRGH HCAPGDINCT AGFKESLGSR NYKLLHVPVH GPTHSHHHDP PHPFPTVDVP  60
   61 DHAHYIIGSV ILIVGITGVI GNALVVYVFC RSRTLRTAGN MFIVNLAVAD FLMSVTQSPV 120
  121 FFAASLHRRW VFGERPCELY AFCGALFGIC SMMTLTAIAA DRCLAITQPL ALVSRVSRRK 180
  181 AGAVLVVVWL YSLGWSLPPF FGWSAYVPEG LQTSCSWDYM TFTPSVRAYT ILLFVFVFFI 240
  241 PLGIIGSCYF AIFQTIRAAG KEIRELDCGE THKVYERMQN EWKMAKVALV VIVLFIISWS 300
  301 PYSVVALTAT AGYSHFLTPY MNSVPAVIAK ASAIHNPIIY AITHPKYRVA IARYIPVLRP 360
  361 ILRVKEKDLR SSFSSGSVSS RRPTLTSQCS LGVSMGNAAR ANGRWGKTRL SSASDSDSCW 420
  421 TESEADGSSV SSLTFGRRVS TEISTDTVIL SSGSSVSNAS GQKSERAHKV ISVPVPSITF 480
  481 ETDAADGESL SDGKALLGGN

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.95
Transmembrane Helix	65	89	0.90
Cytoplasmic	90	100	0.82
Transmembrane Helix	101	123	0.86
Non-Cytoplasmic	124	138	0.90
Transmembrane Helix	139	160	0.92
Cytoplasmic	161	180	0.88
Transmembrane Helix	181	202	0.89
Non-Cytoplasmic	203	228	0.92
Transmembrane Helix	229	253	0.92
Cytoplasmic	254	286	0.96
Transmembrane Helix	287	309	0.90
Non-Cytoplasmic	310	325	0.74
Transmembrane Helix	326	343	0.54
Cytoplasmic	344	500	0.65