YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGB_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.90
Transmembrane Helix	51	72	0.48
Non-Cytoplasmic	73	129	0.48
Transmembrane Helix	130	149	0.62
Cytoplasmic	150	159	0.71
Transmembrane Helix	160	194	0.54
Non-Cytoplasmic	195	213	0.78
Transmembrane Helix	214	234	0.89
Cytoplasmic	235	245	0.85
Transmembrane Helix	246	270	0.86
Non-Cytoplasmic	271	299	0.95
Transmembrane Helix	300	321	0.89
Cytoplasmic	322	327	0.84
Transmembrane Helix	328	346	0.90
Non-Cytoplasmic	347	351	0.82
Transmembrane Helix	352	370	0.90
Cytoplasmic	371	377	0.81
Transmembrane Helix	378	397	0.86
Non-Cytoplasmic	398	541	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERDDGGGGG LFFRGLQNRS HEKTKLRTRK STLYLSPQKS TGRCGDLGEN IYLVLFIIAL  60
   61 RICNCFLVQT SFVPDEYWQS LEVAHRMVFN YGYLTWEWTE RLRGYTYPLI FASIYKILHL 120
  121 LGKDSVHLLI WIPRLAQALL SAIADLRLYS LMKQLENQQV ARWVFFCQLC SWFTWYCCTR 180
  181 TLTNTMETVL TIIALFYYPL EGSKSMNSVK YSSLVALAFI IRPTAVIPWI PLLFRHFWQE 240
  241 QRKLDLILHQ FLPVGFVTLS LSLIIDRIFF GQWTLVQYNF LKFNVLQDLG SFYGSHPWHW 300
  301 YFSQGFPAVL GTHLPFFIHG CFLAPKRYRI FLVTVLWTLL VYSMLSHKEF RFIYPVLPFC 360
  361 MVFCGYSLNN LKTWKKPALS FLFLSNMLLA LYTGLVHQRG TLDVMTNIQE LSYNNTNVSS 420
  421 ASVLMMMPCH STPYYSHVHY PLPMRFLQCP PDLTGKTDYL VEADMFYLNP LKWLYMEFQN 480
  481 DSQLPTHLIM FSVLEEEISP FLISNNYERT AVFFHTHFPE SRTGSHIYVY ERKLKGKLNQ 540
  541 R