YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90821861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKYLLKRVL YMLLTLFLVA TITFFLMKLM PGTPYTNQAK MTASQIEIMN KQYGLDKPIW  60
   61 EQYLIYIFGM FHGDFGTSFQ YSNQPVAYLI SSRLGASMQL GLQAMIFGVF FGVILGAAAA 120
  121 IKHNTWADTG ATVIAIIGKS VPNFVLAILL QYYIALKLGW FPIAGWGQFS NTILPTIALG 180
  181 VGPLAETARF IRTSMVEVLN SDYIELAKAK GLSKFEVVYH HALRNSLIPL VTLLGPYTVA 240
  241 LMTGSMVIEN IFNIPGIGEQ FVKSIMTNDY PTIMGVTMVF SIGLVVVILI TDIIYGLIDP 300
  301 RIRLEGNGGN K

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	99	0.84
Transmembrane Helix	100	121	0.91
Cytoplasmic	122	131	0.60
Transmembrane Helix	132	155	0.79
Non-Cytoplasmic	156	163	0.67
Transmembrane Helix	164	185	0.75
Cytoplasmic	186	226	0.88
Transmembrane Helix	227	248	0.83
Non-Cytoplasmic	249	272	0.84
Transmembrane Helix	273	296	0.90
Cytoplasmic	297	311	0.90