YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90962282, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.83
Transmembrane Helix	14	37	0.85
Non-Cytoplasmic	38	43	0.74
Transmembrane Helix	44	63	0.88
Cytoplasmic	64	67	0.76
Transmembrane Helix	68	87	0.78
Non-Cytoplasmic	88	95	0.75
Transmembrane Helix	96	117	0.91
Cytoplasmic	118	126	0.71
Transmembrane Helix	127	145	0.96
Non-Cytoplasmic	146	162	0.78
Transmembrane Helix	163	181	0.93
Cytoplasmic	182	187	0.75
Transmembrane Helix	188	212	0.86
Non-Cytoplasmic	213	235	0.82
Transmembrane Helix	236	257	0.88
Cytoplasmic	258	312	0.76
Transmembrane Helix	313	332	0.79
Non-Cytoplasmic	333	339	0.52
Transmembrane Helix	340	361	0.84
Cytoplasmic	362	370	0.89
Transmembrane Helix	371	391	0.96
Non-Cytoplasmic	392	399	0.81
Transmembrane Helix	400	420	0.87
Cytoplasmic	421	444	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEKNVNHGR AAILGLQHLL AMYSGAVAVP LLIGTALKFN SEQMTYLVSI DIFMCGLATF  60
   61 IQLARNKYFG IGLPVVLGCA IQAVEPLKMI GKQFTIRTMY GAIIVAGIFV FLISGYFSKI 120
  121 KKLFPPVVTG TLITVIGLTL IPIALQNIGG GDATAADFGN WKNLVTGFVT ILIILIIQIW 180
  181 GKGFLSSIAV LIGLILGTLL AATMGMVSLQ PIVEAAWFHV PQPFYFGAPH FEWSSSVTMI 240
  241 IISLVSMVES TGVFFALGNL LNKDITEDDL KHGYRAEGLA VVLGGIFNTF PYTTFSQNVG 300
  301 LLQLTGIKTK RPIYWSAVLL MILGLLPKIG ALATIIPTPV LGGAMLVMFA MISVQGIRML 360
  361 IDVDFKDERN ILIVAVSIGL GLGVSIYPTI FQNLPRTVQL FLGNGIVVAS ICSVGLNVCF 420
  421 KGKEGLDQEQ ITQKDERPMT VETK