YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90821191, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.88
Non-Cytoplasmic	30	108	0.87
Transmembrane Helix	109	129	0.89
Cytoplasmic	130	137	0.67
Transmembrane Helix	138	158	0.77
Non-Cytoplasmic	159	161	0.70
Transmembrane Helix	162	182	0.86
Cytoplasmic	183	189	0.76
Transmembrane Helix	190	207	0.90
Non-Cytoplasmic	208	211	0.84
Transmembrane Helix	212	229	0.92
Cytoplasmic	230	235	0.83
Transmembrane Helix	236	257	0.66
Non-Cytoplasmic	258	390	0.67
Transmembrane Helix	391	413	0.93
Cytoplasmic	414	420	0.65
Transmembrane Helix	421	443	0.90
Non-Cytoplasmic	444	452	0.54
Transmembrane Helix	453	473	0.86
Cytoplasmic	474	486	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKFRKNIS PPLLACVLAA VIVGYLLFVS PINGYADNGD FARVIYINGI YPLDTKNYQY  60
   61 TTYLTQHYGL FKYYNEHIAM LFSSQGIFVK TAVLLNKLFY SKTVFDIRFM GLVYYVFYLG 120
  121 AIYLLTLAVT NSNRRKNVDY VIALIVVFMF ADSSLTLYFN SFFAEPVMII AMMYITASLL 180
  181 LLMKKHFARS WYILAVYFLS SLALVTVKQQ NAPLALSLVV VTIGIYFVYR NKLSRLLIPI 240
  241 SCLILLESGI ATYVMITDQF SNINSYQSMT RGVMLKEQDP GNSLEKGGIS RQYGLLKGDI 300
  301 YTQTYAATSI KSKNITKDFI PKYNFAWILK YYLTHEQQFN EMLDVAARDG YLVQIKAVGD 360
  361 FTKKSGAKTH QQVQYFTLYG AMMKAFFPKK FAFYMTLCVV LVALYIVIFV ISVKSNEMES 420
  421 AIKVFMVIGY TTMVIGTFIT AVVGDGDADL AKHLLMVPLS LNLIFLQIIS DVLHHNFWHP 480
  481 SREGEY