YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90961054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.98
Transmembrane Helix	109	130	0.88
Non-Cytoplasmic	131	157	0.86
Transmembrane Helix	158	177	0.90
Cytoplasmic	178	186	0.64
Transmembrane Helix	187	202	0.62
Non-Cytoplasmic	203	218	0.55
Transmembrane Helix	219	237	0.86
Cytoplasmic	238	250	0.47
Transmembrane Helix	251	274	0.85
Non-Cytoplasmic	275	285	0.54
Transmembrane Helix	286	313	0.75
Cytoplasmic	314	332	0.42
Transmembrane Helix	333	358	0.80
Non-Cytoplasmic	359	365	0.44
Transmembrane Helix	366	387	0.66
Cytoplasmic	388	394	0.60
Transmembrane Helix	395	417	0.84
Non-Cytoplasmic	418	434	0.56
Transmembrane Helix	435	457	0.89
Cytoplasmic	458	644	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHKKVAKNV VDAVGRDNLI AAAHCATRLR LVLKDDKKVN QAALDADPDV KGTFKTNGQY  60
   61 QVIIGPGDVN NVYDELIKDT GLKELSTDDL KKVAEQGQKF NPVMAFIKLL SDIFVPIIPA 120
  121 LVAGGLLMAL NNFLTQPGLF GPKSIVSTSP VIKGLSDMIQ LMSAAPFIFM PILVAISASK 180
  181 RFGANRFLGA AIGMIMTSPD LGKTAKYWDI FGMHVAQTNY AYQVIPVIAA VWVLAFLEKR 240
  241 FHKWLPAAVD FTFTPLLSVM ITGFLTFTVI GPVLKTVSDM LTNGIVWLYD TTSFVGMGIF 300
  301 GLTYSAIVMT GLHQSFPAIE TQLVTAFANG HGAGDFIFVV ASMANVAQGA ATFAIYFLTK 360
  361 DKKMKGLSSS AGVSALLGIT EPALFGVNLK YKFPFFCALI GSGVAAAFAG LMHIIAASMG 420
  421 AAGFIGFLSI YPKSIPMYVV AELISFAVAF ILTFIYGKGH MKEEQVAPVV SASEAAETEA 480
  481 KVEEQVAAES KLNDEVVAAP ISGESKKLTD VNDPVFSTLA MGNGAAVVPT DGTIYAPVDG 540
  541 ELTVAYETKH AYGLKSDNGA EVLIHVGIDT VNLKGQHFES FVKQGQKVKK GDKLGTVDLD 600
  601 AVKAAGYDTT VMVVVTNTMN YASVDRIDNT KVNHGDDLVA VTAR