YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85813153
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQACAVSGI LASHSQVKLD STYVSGLKMP ASLVITQKKE LKIGRVCNTR CHGVSTTADS  60
   61 EPEQLDTKMF RKNLTRSNNY NRKGFGHKKE TLELMDQEYT SDVVKTLKEN NYEYTWGNVT 120
  121 VKLAEAYGFC WGVERAVQIA YEARKQFPEE RIWMTNEIIH NPTVNKRIEE MKVQYIPVDE 180
  181 EGKRFDVVDK GDVVILPAFG AAVHEMQYLS EKNVQIVDTT CPWVSKVWNT VEKHKQGDYT 240
  241 SIIHGKYAHE ETVATASFAG TYIIVKTIDE AAYVCDYILD GKLNGSSGTK AEFLQKFKNA 300
  301 VSKGFDPHVA LVKVGIANQT TMLKGETEDI GKLVEKTMMH KFGVENINDH FISFNTICDA 360
  361 TQERQDAMHQ LVKDKLDLIL VIGGWNSSNT SHLQEIAELN GIPSYWIDSE ERIGPGNMIA 420
  421 YKLNHGELVE KENWLPEGPI TIGVTSGAST PDKVVEDVLK RVFQIKQEET LPVA

Type	Start	End	Confidence
Signal Peptide	1	15	0.84
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	474	0.99