YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33286847
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLATTPSSS TLAPAVTVRA PGNRSVVRVS ADVPIWVVPC YSAILLCAVV GNLLVVLTLV  60
   61 KNRRMRTITN VFLLNLAISD ILLGVFCMPV TLVGTLLRHF IFGELLCKLI QFAQAASVAV 120
  121 SSWTLVAISC ERYYAICHPL RSRTWQTINH ANKIIAIIWL GSLVCMTPIA AFSQLMPTSR 180
  181 PGLRKCREQW PADSLNYERA YNLFLDLALL VLPLLALSFT YLFITRTLYV SMRNERAMNL 240
  241 GSSGPEVTTS SSAAVAEAGS QRRANGSHCQ SLDTIVPHQH NPHQQHHHHS QYYYDYGHCG 300
  301 SKRRLISGGG PCEGRRHLYC MRSASVKSLR HQQINGGGGT LSGTGAGNGE CCSRVHRMRQ 360
  361 QMQLQQQGYV SDNESRRKSL SQPSLRITEA GLRRSNETKS LESKKRVVKM LFVLVLEFFI 420
  421 CWTPLYVINT MTMLLGPTVY EYVGYTSISF LQLLAYSSSC CNPITYCFMN ASFRRAFVDT 480
  481 FKGMRVCERL CAPCCFWRRR SKNETNLSVA GNSIALANSV MSSHTILESP RL

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.94
Transmembrane Helix	37	60	0.88
Cytoplasmic	61	70	0.91
Transmembrane Helix	71	93	0.86
Non-Cytoplasmic	94	111	0.74
Transmembrane Helix	112	134	0.87
Cytoplasmic	135	150	0.93
Transmembrane Helix	151	172	0.90
Non-Cytoplasmic	173	203	0.94
Transmembrane Helix	204	225	0.88
Cytoplasmic	226	407	0.99
Transmembrane Helix	408	428	0.90
Non-Cytoplasmic	429	447	0.80
Transmembrane Helix	448	468	0.87
Cytoplasmic	469	532	0.76