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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115495675, gi...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLLEPCWW ILFLKITSSV LHYVVCFPAL TEGYVGTLHE NRQGSSVQAQ IRRRKASGDP  60
   61 YWAYSGAYGP EHWVTSSVSC GGRQQSPIDI SDQHARVSEE YQDLQLDGFD NESSNKTWMK 120
  121 NTGKTVAILL KDDYFVSGAG LPGRFKAEKV EFHWGHSNGS AGSEHSINGR RFPVEMQIFF 180
  181 YNPDDFDSFQ TAISENRIIG AMAVFFQVSP RDNSALDPII HGLKGVVHHE KETFLDPFIL 240
  241 RDLLPASLGS YYRYTGSLTT PPCSEIVEWI VFRRPVPISY HQLEAFYSIF TTEQQDHVKS 300
  301 VEYLRNNFRP QQGLNNRVVY KSAIRDAWNH DMTDFLENPL GTEASKVCSS PPIHMKVQPL 360
  361 NQTALQVSWS QPETIYHPPI MNYMVSYSWT KNEDEKEKTF TKDSDKDLKA TISHVSPDSL 420
  421 YLFRVQAVCR NDMRSDFSQT MLFQANTTRI FQGTRIVKTG VPASPASSAD MAPISSGSST 480
  481 WTSSGIPFSF VSMATGMGPS SRGSQATVAS VVTSTLLAGL GFSGGGISSF PSTVWPTRLP 540
  541 TAASASKQAG RPVLATTEAL ASPGADGDSA PSKDGEGAEE SEKDEKSESE DGEREHEEEG 600
  601 EKDSEKKERS GVTHAPRARN HTQPTAAPSA PGTVAQEGAH QTTSGRERAR TAIPTARPQD 660
  661 ALDPLSVTPT QVPEKNTSGM ISRPSPGRME WIIPLIVVSA LTFVCLILLI AVLVYWRGCN 720
  721 KIKSKGFPRR FREVPSSGER GEKGSRKCFQ TAHFYVEDSS SPRVVPNESI PIIPIPDDME 780
  781 AIPVKQFVKH IGELYSNNQH GFSEDFEEVQ RCTADMNITA EHSNHPDNKH KNRYINILAY 840
  841 DHSRVKLRPL PGKDSKHSDY INANYVDGYN KAKAYIATQG PLKSTFEDFW RMIWEQNTGI 900
  901 IVMITNLVEK GRRKCDQYWP TENSEEYGNI IVTLKSTKVH ACYTVRHFSV RNTKVKKGQK 960
  961 GNPKGRQNER VVIQYHYTQW PDMGVPEYAL PVLTFVRRSS AARTPEMGPV LVHCSAGVGR1020
 1021 TGTYIVIDSM LQQIKDKSTV NVLGFLKHIR TQRNYLVQTE EQYIFIHDAL LEAILGKETE1080
 1081 VSSSQLHSYV NSILIPGVGG KTRLEKQFKL VTQCNAKYVE CFSAQKECNK EKNRNSSVVP1140
 1141 SERARVGLAP LPGMKGTDYI NASYIMGYYR SNEFIITQHP LPHTTKDFWR MIWDHNAQII1200
 1201 VMLPDNQSLA EDEFVYWPSR EESMNCEAFT VTLISKDRLC LSNEEQIIIH DFILEATQDD1260
 1261 YVLEVRHFQC PKWPNPDAPI SSTFELINVI KEEALTRDGP TIVHDEYGAV SAGMLCALTT1320
 1321 LSQQLENENA VDVFQVAKMI NLMRPGVFTD IEQYQFVYKA MLSLVSTKEN GNGPMTVDRN1380
 1381 GAALTADESD PAESMESLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle