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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94405364
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEGCWAAA VVAGSGQPGA SGVDKGSLAG ANQDMEPSGG GLGPGRGTRD KKKGRSPDEL  60
   61 PATGGDGGKH KKFTLKRLMA DELERFTSMR IKKEKEKPNS AHRNSSASYG DDPTAQSLQD 120
  121 ISDEQVLVLF EQMLVDMNLN EEKQQPLREK DIVIKREMVS QYLHTSKAGM NQKESSRSAM 180
  181 MYIQELRSGL RDMHLLSCLE SLRVSLNNNP VSWVQTFGAE GLASLLDILK RLHDEKEETS 240
  241 GNYDSRNQHE IIRCLKAFMN NKFGIKTMLE TEEGILLLVR AMDPAVPNMM IDAAKLLSAL 300
  301 CILPQPEDMN ERVLEAMTER AEMDEVERFQ PLLDGLKSGT SIALKVGCLQ LINALITPAE 360
  361 ELDFRVHIRS ELMRLGLHQV LQELREIENE DMKVQLCVFD EQGDEDFFDL KGRLDDIRME 420
  421 MDDFGEVFQI ILNTVKDSKA EPHFLSILQH LLLVRNDYEA RPQYYKLIEE CVSQIVLHKN 480
  481 GTDPDFKCRH LQIDIERLVD QMIDKTKVEK SEAKATELEK KLDSELTARH ELQVEMKKME 540
  541 NDFEQKLQDL QGEKDALDSE KQQITAQKQD LEAEVSKLTG EVAKLSKELE DAKNEMASLS 600
  601 AVVVAPSVSS SAAVPPAPPL PGDSGTVIPP PPPPPPLPGG VVPPSPPLPP GTCIPPPPPL 660
  661 PGGACIPPPP QLPGSAAIPP PPPLPGVASI PPPPPLPGRT GIPPPPPLLP GSVGVPPPPP 720
  721 LPGGPGLPPP PPPFPGAPGI PPPPPGMGVP PPPPFGFGVP AAPVLPFGLT PKKVYKPEVQ 780
  781 LRRPNWSKFV AEDLSQDCFW TKVKEDRFEN NELFAKLTLA FSAQTKTSKA KKDQEGGEEK 840
  841 KSVQKKKVKE LKVLDSKTAQ NLSIFLGSFR MPYQEIKNVI LEVNEAVLTE SMIQNLIKQM 900
  901 PEPEQLKMLS ELKEEYDDLA ESEQFGVVMG TVPRLRPRLN AILFKLQFSE QVENIKPEIV 960
  961 SVTAACEELR KSENFSSLLE LTLLVGNYMN AGSRNAGAFG FNISFLCKLR DTKSADQKMT1020
 1021 LLHFLAELCE NDHPEVLKFP DELAHVEKAS RVSAENLQKS LDQMKKQIAD VERDVQNFPA1080
 1081 ATDEKDKFVE KMTSFVKDAQ EQYNKLRMMH SNMETLYKEL GDYFVFDPKK LSVEEFFMDL1140
 1141 HNFRNMFLQA VKENQKRRET EEKMRRAKLA KEKAEKERLE KQQKREQLID MNAEGDETGV1200
 1201 MDSLLEALQS GAAFRRKRGP RQVNRKAGCA VTSLLASELT KDDAMAPGPV KVPKKSEGVP1260
 1261 TILEEAKELV GRAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle