YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94403560
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKYPHYASF LHSDVLVLGD INPVLVLTLQ GAIDVSALAS NREVRGPGPG TPRNRPLLPL  60
   61 LLLLLLLPLP ASAWYKHVAS PRYHTVGRAS GLLMGLRRSP YQWRRALGGA AGPLSRLPGP 120
  121 VARGALLLPS SGQELWEVRS RSSPAGLPVH APWSPRDLEG VRQPEQSLSL HSWISEEPAA 180
  181 RAFGETLRAQ PWFLQQVIFA DPVRPKNRWR PHA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.56
Transmembrane Helix	16	33	0.54
Non-Cytoplasmic	34	56	0.61
Transmembrane Helix	57	78	0.78
Cytoplasmic	79	213	0.57