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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94402499
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNGIGLPTP RGSGTNGYVQ RNLSLVRGRR GERPDYKGEE ELRHLEAALV KRPNPDILDH  60
   61 ERKRRVELRC LELEEMMEEQ GYEEQQIQEK VATFRLMLLE KDVNPGAKEE TPGQRPVVTE 120
  121 THQLAELNEK KNERLRAAFG ISDSYVDGSS FDPQRRAREA KQIAPEPPKP YSLVRETSSS 180
  181 RSPTPKQKKK KKKKDRGRRS ESSSPRRERK KSSKKKKHRS ESESKKRKHR SPTPKSKRKS 240
  241 KDKKRKRERE RERGREGERG RRXRPAWSTS GSGTDFPGLP CPPLTHRSRS AAAKIHTTAL 300
  301 TGQSPPLASG HQGEGDAPSV EPGATNIQQP SSPAPSTKQS SSPYEDKDKK EKSAVRPSPS 360
  361 PERSSTGPEL PAPTPLLVEQ HDDSPRPLAA IPSSQEPVNP SSEASPTRGC SPPKSPEKPP 420
  421 QSTSSESCPP SPQPTKVSRH ASSSPESLKP TPAPGSRREI SSSPTSKNRS HGRAKRDKSH 480
  481 SHTPSHRAGR SRSPATKRGR SRSRTPTKRG HSRSRSPQWR RSRSAQRWGK SRSPQRRGRS 540
  541 RSPQRPGWSR SRNTQRRGRS RSARRGRSHS RSPATRGRSR SRTPARRGRS RSRTPARRRS 600
  601 RSRTPARRRS RSRTPARRGR SRSRTPARRR SRTRSPVRRR SRSRSQARRS GRSRSRTPAR 660
  661 RSGRSRSRTP ARRGRSRSRT PARRSARSRS RTPARRGRSR SRTPARRRSR SRSLVRRGRS 720
  721 HSRTPQRRGR SGSSSERKNK SRTSQRRSRS NSSPEMKKSH VSSRRSRSLS SPRSKAKSLR 780
  781 RSLSGSSPCP KQKSQTPTRR SRSGSSPPKQ KSKTPPRQSR SNSPQPKVKS GTPPRPGSVT 840
  841 NMQADECTAT PQRQSHSESS PDGEVKSRTP SRQSCSGSSP RVKSSTPPRQ SPSRSSSPQP 900
  901 KVKTVISPRG RSHSSSSSPS PSRVTSRTPQ RKSRSVSPCP KVDSRLRHSR SRSSSPDSKM 960
  961 ELGTPLRHSG STSPYPKSML QTPPDQNLSG SKSPCPQKSR DSPTGSSGSF HLCPGVTPSS1020
 1021 IVPGESCFSA SFVQQKGHTQ TWPDTSSPEV MQTQVESPLL QSKSQTSPKG SLSRSSSPVT1080
 1081 ELTARSPVKQ DKSEISTDPK LKSGMSPEQS KTKPDSSIYP LVDSKSFLVQ SRLEPSELKE1140
 1141 RLGLIQEDVA SSCIPRDKFS PTQDRPESST VLKVTPRVLL KERSGAGSPP GKRDQKSLLP1200
 1201 NSSQDELMEV EKSEQPLSQV LPSLSPEHKE MPGSNIESSP EVEERPAVLS ALDQSQSQPS1260
 1261 KAAETPAVAS CWSGPQVSPE HKELSHSPPR ENSFESSLEF KNSGPVSEVN TGFSPEVKEE1320
 1321 LNGSFLNQTE ADPSVDMKEQ SRSSRRSSSE LSPEVVEKVG LFSSQKVSSP VLETVQQRTP1380
 1381 SRERSSSASP ELKDGLPRTP SRRSRSGSSP GLRDGSGTPS RHSLSGSSPG MKDTPQTPSR1440
 1441 GRSECDSSPE PKALPQTPRA RSHSPSSPER NNKSVTPQRE RSGSESSVEQ KNLARTSPGQ1500
 1501 RSRSGSSQEL DGKPSASPQE RSESDSSPDS KPKTRTPLRQ RSHSGSSPEV DSKSRHSPRL1560
 1561 SRSGSSPEMK DKPRVLQRAQ SGTDSSPEHK IPAPRALPRH SRSGSSSKER GPSPEGSSSS1620
 1621 ESSPEHAPKS RTARRGSRSS IEPKTKSRTP PRRRSSRSSP ELTRKARVSR RSRSASSSPE1680
 1681 IRSRTPPRRR RSPSVSSPEP TEKSRSSREE ALSFFSPYQD TGEFSNLLXT QKRPLPDTLD1740
 1741 QSEAISIKNI TSSLEALXIS SLTSYSSAVQ VQNTTDKPTX VQISDLTCEX ETVKVSEXAX1800
 1801 ISIKSIPSES KAIQVQNTTS NSSSFKIQNT NSPSFSFXDS SSDSQKVQIQ DSTSNQEAIX1860
 1861 KQNFTCYXKK IKIQDIPSHP EKIEISNISS HPEAVPFPNL SSNKTTLQVS NSASNSKTIX1920
 1921 VSDTTVATQA LSKPLTTCYP PPFXVSYSXG SSRQAVLNKI SSSHSXAVCI WKXFXSFTFC1980
 1981 HSSSNKESFW ISDTSCSTQX LXNELLXPSX HVTNSSXPMX ITWNAXTPWK RXNAHVCATA2040
 2041 NRWLHDGWSR SSDSXSPKII CSRKPCSVXN CTCLDSHQSW YCPATSIHVC CWPCCKNVPG2100
 2101 SSTCTSHEPX NSPSCXPCQQ DSSSICSSYE PCXCQDICYS GICEPCXLKN TSCCSSYELS2160
 2161 QPXNSSGSFS CEPCRSSNPC SFSCEPSRSX NTSCISSFES HRLWDTSNCC KLPLQFQNTP2220
 2221 GSNPRKPGGG SSICAWHSSC EYCWLXNPCR LGSHKSLQFQ DGSSIVWCKP HQSQGAPFCL2280
 2281 XSCXWQNLTF NAXSSQVQNT TICPKPVXND LXAXAGSFPC FKNGSGFFAI SSPSCTGSAS2340
 2341 VPCAICFFRP ISFSCPDHSC SRVSVPFIRD SSEVHILCXX PQWHAFWPCP WDIPCXRWGA2400
 2401 TCLYWGPAAF YIGCSATSXG TSELFLLFII IXLLLLFIIF IVILLFLWLQ FXXFRGFQPS2460
 2461 SSTXGGTEKG SQPHPSPKGG YXRGTSSGTN PGQKEEALXQ LQFQLLLLLL FLFFLFLLLL2520
 2521 IFLLLFFLFL LLFLLLFLLP LPCXAWPSGI TQTCKPQEAT PWREEVSKSS EANRLPSGFP2580
 2581 IPQLLTRXAS TALAPTFTKG STEQXASFLE RPARGQSLSW SQEEGDTXSP FXSSPLLQVS2640
 2641 I

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