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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94396621
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGCRWAPGG APEPPVNLLP PLDWLNHLQT KGSGRVRPDA QTGGLRHLAL GGACSSMLPP  60
   61 VAVTGTEFGS PQSASPKRGE IWKVSRSTSV ESSLTEGYVG TLQESRQDSS VQIRRRKASG 120
  121 DPYWAYSGAY GPEHWVTSSV SCGGSHQSPI DILDHHARVG DEYQELQLDG FDNESSNKTW 180
  181 MKNTGKTVAI LLKDDYFVSG AGLPGRFKAE KVEFHWGHSN GSAGSEHSVN GRRFPVEMQI 240
  241 FFYNPDDFDS FQTAISENRI IGAMAIFFQV SPRDNSALDP IIHGLKGVVH HGDEPFVSPQ 300
  301 VLLELLQAGS KLRFTGSHLL SSSPCLSHEW VLFSRSAPVS LHPLEAFYSI FTTEQQDHVK 360
  361 SVEYLRNNFR PQQALNDRVV SKSAVRDAWN HDLADFLDNP LGTEASKVCS SPPIHMKVQP 420
  421 LNQTALQVSW SQPETIYHPP IMNYMISYSW TKNEDEKEKT FTKDSDKDLK ATISHVSPDS 480
  481 LYLFRVQAVC RNDMRSDFSQ TMLFQANTTR IFQGTRIVKT GVPTASPASS ADMAPISSGS 540
  541 STWTSSGIPF SFVSMATGMG PSSSGSQATV ASVVTSTLLA GLGFGGGGIS SFPSTVWPTR 600
  601 LPTASAASKQ AGRTVLATTE ALASPGPDVD SAPTKDSEGT EEGEKEEKSE SEDGEREHEE 660
  661 EEKDSEKKEK SEATHTAAES DRTAPAPTPS SPHRTAAEGG HQTIPGRRQD HSAPATDQPG 720
  721 HVAPDLDPLV DTATQVPPTA TEEHYSGSDP RRPEMPSKKP MSRGDRFSED SKFITVNPAE 780
  781 KNTSGMLSRP SPGRMEWIIP LIVVSALTFV CLVLLIAVLV YWRGCNKIKS KGFPRRSREV 840
  841 PSSGERGEKG SRKCFQTAHF YVEDSSSPRV VPNESVPIIP IPDDMEAIPV KQFGKHIGEL 900
  901 YSNSQHGFSE DFEEVQRCTA DMNITAEHSN HPDNKHKNRY INILAYDHSR VKLRPLPGKD 960
  961 SKHSDYINAN YVDGYNKAKA YIATQGPLKS TFEDFWRMIW EQNTGIIIMI TNLVEKGRRK1020
 1021 CDQYWPTENT EEYGNIIVTL KSTKVHACYT VRRLSVRNTK VKKGQKGNPK GRQNERTVIQ1080
 1081 YHYTQWPDMG VPEYALPVLT FVRRSSAARM PDMGPVLVHC SAGVGRTGTY IVIDSMLQQI1140
 1141 KDKSTVNVLG FLKHIRTQRN YLVQTEEQYI FIHDALLEAI LGKETEVSSS QLHSYVNSIL1200
 1201 IPGVGGKTRL EKQFKLITQC NAKYVECFSA QKECNKEKNR NSSVVPAERA RVGLAPLPGM1260
 1261 KGTDYINASY IMGYYRSNEF IITQHPLPHT TKDFWRMIWD HNAQIIVMLP DNQSLAEDEF1320
 1321 VYWPSREESM NCEAFTVTLI SKDRLCLSNE EQIIIHDFIL EATQDDYVLE VRHFQCPKWP1380
 1381 NPDAPISSTF ELINVIKEEA LTRDGPTIVH DE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle