YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94390429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQDSHDDT EDVSLFDAEE ETTNRPRKSK IRHPVASFFH LFFRVSAVVV YLLCELLSSS  60
   61 FIACMVTIIL LLSCDFWAVK NVTGRLMVGL RWWNHIDEDG KSHWVFESRK STPQDNKTIS 120
  121 EAESRIFWLG LIACPVLWVI FAFSALFSFR VKWLAVVIMG VVLQGANLYG YIRCKVGSKK 180
  181 NLTSMATSYL GKQFLRQGGS TLDLNTFGCC TIQIAKSGDF MLLSFLLRVD TVLITLGKLG 240
  241 KKLVGGMENS IEKTSSFNSI KESLT

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	54	0.91
Non-Cytoplasmic	55	58	0.80
Transmembrane Helix	59	79	0.91
Cytoplasmic	80	125	0.95
Transmembrane Helix	126	147	0.93
Non-Cytoplasmic	148	152	0.82
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	265	0.92