YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94379950
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRWAAYKSS KDPRRVVSDL IITPGSCKAL SMSAHGKSVK TTEEVALQIL LLCQFGVGTV  60
   61 ANVFLFVHNF SPVLTGSKQR PRQVILSHMA VANALTLFLT IFPNNMSAFA PKTPPNELKC 120
  121 KLDFFSHMVA RSKNLCSTCV LSIHQFVTLV PVNRGKGKLI LRASVPNLWN YSCYSCWFYS 180
  181 VLSNIHIPIK VTGPQITDNN TDSKSNLFCS TSGFIVGMVF LQFSHDATFM SIMVWTSVSM 240
  241 VLLLHRHRQR MQHILTPNQD ARGQAETRAT HTILMLVVTF VSFYLLNCIC IIFHAFSIHS 300
  301 RLFIRLVSEV LAAVFPSICP LLLIFRDPKD PCSLNVLNGP DQTDTLAPS

Type	Start	End	Confidence
Cytoplasmic	1	44	0.65
Transmembrane Helix	45	68	0.81
Non-Cytoplasmic	69	83	0.45
Transmembrane Helix	84	104	0.87
Cytoplasmic	105	167	0.48
Transmembrane Helix	168	187	0.52
Non-Cytoplasmic	188	222	0.76
Transmembrane Helix	223	245	0.85
Cytoplasmic	246	271	0.93
Transmembrane Helix	272	296	0.91
Non-Cytoplasmic	297	302	0.83
Transmembrane Helix	303	325	0.78
Cytoplasmic	326	349	0.83