YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94379936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALVTTEIG PWETSVVIDL AITVPLGAVR LLETPIGNIP LPGTLYRLRG VIRLRGSPMQ  60
   61 TPPPITDIVI PGIDSALNKP VAVHYHRLDI RGSAEDLSSA DAERAAVGLQ FSTLAAGTEP 120
  121 SWFGLGKALS MSAHGKSVKT TEEVALQLLL LCQFGVGTVA NVFLFVHNFY PVLTGSKQKP 180
  181 RQVILSHMAV ANALTLFLTI FPNNMMAFAP KTPPTELKCK LESFSHLVAR STNLCSNCVL 240
  241 GVHQFVTLVP LNRGKGKLVL RASVTNMASY SSYSCWFFSV LSNIHIPIKV SGPQITDNNT 300
  301 DSKRKLFCST SGFSVGIVLL QFAYDATFMS IMVWTSVSMV LLLHRHRQRM QHILTPNQNP 360
  361 RGQAETRATR TILMLVVTFV SFYLLNFICI MLHALFMHSH FFVRLVSEIL TAVFPSISPL 420
  421 LLIFRDPKDP CSVLFNC

Type	Start	End	Confidence
Cytoplasmic	1	144	0.75
Transmembrane Helix	145	167	0.82
Non-Cytoplasmic	168	182	0.68
Transmembrane Helix	183	203	0.88
Cytoplasmic	204	262	0.68
Transmembrane Helix	263	286	0.65
Non-Cytoplasmic	287	321	0.83
Transmembrane Helix	322	343	0.91
Cytoplasmic	344	370	0.95
Transmembrane Helix	371	395	0.90
Non-Cytoplasmic	396	401	0.79
Transmembrane Helix	402	424	0.79
Cytoplasmic	425	437	0.85