YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94375456
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCGRGSGPV LGASYRALLG TDAGFVDRLE EQQQVAPCSV TAQVLGVGPR ASVPGQLFGT  60
   61 VPVTRAVDPF PSMQSLTLVL PLLLLLLLTL VSRFLPYGCC DSMCFQALYS TVRACCICLS 120
  121 PHHQSPHHCE RVEQDHLKEA YATTVNVVVT VKLELVQASR IKWTSVSGFA FAVTDTASAL 180
  181 CTAVASDQKI KEELEDLNKE IKKTANRIRG KLKSIEQSCD QDENGNRTSV DLRIRRTQHS 240
  241 VLSRKFVDVM TEYNEAQILF RERSKGRIQR QLEITGRTTT DDELEEMLES GKPSIFISDI 300
  301 ISDSQITRQA LNEIESRHKD IMKLETSIRE LHEMFMDMAM FVETQGEMVN NIERNVVNSV 360
  361 DYVEHAKEET KKAIKYQSKA RRKKWIIAAV AVAVIAVLAL IIGLSVGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	75	0.53
Transmembrane Helix	76	95	0.68
Cytoplasmic	96	384	0.89
Transmembrane Helix	385	406	0.94
Non-Cytoplasmic	407	408	0.80