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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94375120
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERVPQLGIR YGTPRRGTLV LTFRILVWTM IHPGITHHLG EALALQAHSH FSPRFHTQIR  60
   61 EEDKSPPPSS PPPLFSVIPG GFIKQLVRET EKESKEARRR KAAAFTAPEV EIPAVPTNQT 120
  121 NKTNNVPKPG SQQTSQDSSS TTQNSADIPG KEPPGAGDKD STPVTSTSGE RPQESGPTGT 180
  181 PAKRTLPFKR GVRRGDVLLM VAKLDPELAK ADQKVQPRDV PVDKTPAPAK DSGGTKKGVT 240
  241 TGTSSAPQPS MPEKTRTRGV GDTGQSTKGG KCQGTEGKGS RDPQTIGQKE GESQSTEEQG 300
  301 TRSQAQEAGN KEQLGTAEKE GGGPPKKMEK EDEPKVAGAE VRPVEPPVPL RKWGGFLGWR 360
  361 SKWDSPQSKD RVTESHRKDE KTGDLQSPAV DRSCGQLAEP TGQPSGPTGQ PSGPTGQLSE 420
  421 STGQPSGPTG QPAGPTGQPA GPTGQPAGPT GQPAGPTGQQ QEESCKAPDR IPTTGISAEA 480
  481 AKRDGQPESR VQGAGEPRVC TEEEVDVVKP QAEGHVESIP EVVMERLSTL RPMEEKQILQ 540
  541 DPDRGGQSGD SDQAYEDRWY EAQKVWLVQK DGFTLATVLK PDEGTADPPA GRVRLCIDAD 600
  601 RTVIEVDEEQ VHPANPSELD QAEDLASLVS VNESSVMNTL LQRYRAQLPY TCSGPDLITL 660
  661 QPQTTTVPSS GKVPRGRQDG LPAHVTSLAQ RAYWALLSQR RDQSIVALGR SGAGKTTCCE 720
  721 QVLEHLVGMA GSVDGRVSVE KLRATFTVLR AFGCVSTGHS RRATRFAMVM SLDFNATGRV 780
  781 TAAQLQTVLL ENSRVARQPQ GEGNFEVFSQ LLAGMDVDLR TELNLHQMAE SSAFGMGLWS 840
  841 KPEDKQKAAT AFSQLRGAME LLGISEGEQQ AIWRVLAAIY HLGAAGACKV GRKQFMRFEW 900
  901 ANHAAEALGC DYEELNTATF KHHLRQIIEQ MTSGPQRQGL QDNEACSGLK MTGVECVEGM 960
  961 ASGLYQELFV AVVSLINRSF SSHHLSMASI MVVDTPGFQN PRHQGKDRAA TFEELCYNYA1020
 1021 QERLQLLFYH RTFVSTLERY KEEGIPVPFD LPESSPGTTV AVVDQNPSQV HLPAGRGAED1080
 1081 AGGLFWVLDE EVRVQGSSDS TVLERLRAAF EKKKEAGAEE PPSMRTCEQP LQCELFHQLG1140
 1141 RDPVRYDLTG WLRRAKPNLA ALEAPQILQQ SKREELQSLF QARAKLPPVC RAVAGLEGTS1200
 1201 QQALHRSRVV RRAFASSLAA VKRKAPCAQI KLQMDALISL LRRSRLHFIH CLVPTTVESK1260
 1261 AGQRTPSPSQ PSGDQGVANE PTALDIPALR VQLAGSHILE ALRLHRAGYA EHMGLAQFRR1320
 1321 RFQVLDPALL KKLDLTSEEL DERKVVEELL KTLDLEKKAV AVGHSQVFLK AGVVSRLERQ1380
 1381 REKLVSRNIV LFQAACRGFL SRQEYKKLKI RRLATLCIQK NLAVFLKVKD WPWWGLLASL1440
 1441 RPLLSSTLGT EQLRAKEEEL TLLRQKLQKS ENSRSELRQN TDLLESKITD LTSELADERF1500
 1501 KGDVACQALE SERAERLQAL REVQELKTKY QQVQDALGEV QKQLEEAQQR IQGANLEEKP1560
 1561 AGGADEWQMR LDCAQMENDF LRKRLQQCEE RLDSEMKART ELEQKLGELQ SAYEEAKKMA1620
 1621 HQLKRKCHHL TWDLEDTRVL LENQQSRNHE LEKRQKKFDL QLAQALGESM FEKSLREKVS1680
 1681 QENNGVRWEL GQLQQQLEQK EQEASKLKQE VERLQGQKRE LLSCASVGDQ GVASLKERVW1740
 1741 ELETNALEQQ KIHSQQENTI KQLEQLRQRF ELEIERMKQM HQKDREDQEE ELEDVRQSCQ1800
 1801 KRLRQLEMQL EQEYEEKQVA LHEKHDLEGL IGTLCDQIGH RDFDVEKRLR RDLRRTHALL1860
 1861 SDVQLLLATI EDSKTSISKE ELEKVHSQLE QSEAKCEDAL KTQKVLTADL ENMHSELENV1920
 1921 TRSKSLVDEQ LYRLQFERAD LLKRIDEDQG DLNDLMQKHK DLIAQSAADI GQIQELQLQL1980
 1981 EETKKEKQKL REQLHMAQLR IQYLEQSTVE RAIVSRQEAI ICDLENKTEF QKVQIKRFEV2040
 2041 LVIRLRDSMI KMGEELSRAV KAEAQQRENS QYYQQRLEEL KAEMQELAQR EEEASRRCME2100
 2101 LEKYVEELAT VRQTLQTDLE TSIRRIADLQ AALEEVVSSD SDTESVQTAV DCSSRSGKEG2160
 2161 DNVSVISSQP EGSLQSWMSC SLSLATDSVR IPSGQSVVSS SFHSPRVSEE AGDSERLRTA2220
 2221 SSALSGAWDA ARDASKAGSA SLHPVFPQKP YHLGDGEGFA VHRKSTLERS GPLSSSPPSQ2280
 2281 RTAVSPPSRD KLPSPSAALS EFVEELRRKR AQRGQGSTLH LGDGPVLPIF QTTRASSLRR2340
 2341 GRASSDEGDL SLKTRVKSPL GAEGIPGATA GLSRSTSLKC ISSEGPEDIT LLPDKQKTRF2400
 2401 GSCESLLESG PCTRRKLSSP TGLLSPTLRP RRPCLESSVD DAISLELGKE PLVFQNRQFS2460
 2461 HLMEETLDSD PFSWKLPSLN YRRQTKVDFD DFLPAIRKSD TPSSGAAKDG KEASKHPGVH2520
 2521 FEMGEAADRS FLSGIKTILK KSPEVKEDPA HLSDSSSSSS SIVSFKSTGG TGSGPRVPRL2580
 2581 QGDGGERMSP EHRDPGSARR DDDVESIMRK YLQQ

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