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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94373372
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEETGRGDI RASTAKTPEV ESGTDFYQAP ATTARLDVSH DRSKGRGFPP WTRPLAHLLI  60
   61 CLCSTSSTAG SPLGLTTLRE FVLPESSSPP RRFTLPAVTG PGNIQLPPPF SWAKADVMFG 120
  121 AGDEDDTDFL SPSGGAKLAS LFGLDQATMG HGNEFFQYTA PKQPKKGQGT AAGNQTAPKP 180
  181 APATTGTSSV LFATAVHAYR YINGQYAKQG KFGAAVLGNH TSREYRILLY ISQQQPVTVA 240
  241 TIHLNFELMV RPNNYSTFYD DQRQNWSIMF ESEKAAVSFN KQVCVAKCNS ISSLDAVLCQ 300
  301 DLVAAEGPAV ETGDSLEVAY TGWLLQNHVL GQVFDSTANK DKPLRLKLGS GKVVKGLEDG 360
  361 LLGMKKGGKR LIITPSACAA GSEGVIGWTQ PTDSILVFEV EVRRVMKFAR DSGSDGHSVS 420
  421 SRDSAAPSPI PASDSLSADP VVTPLPLPLK PGEPGLRSKS NSLSEQLTVN SNPDTVKAKL 480
  481 ISRMAKMGQP MLPILPPQLD SNDSETEDAT VLRGAGQSLV TPSIQPSLQP AHPVLPQMAS 540
  541 QAPQPSGSGL QTPSAALMQA VSLDSHSAVS GNAQNFQPYA GVQAYAYPQT PSVTSQLQPV 600
  601 RPLYPAPLSQ APHFQGSGDM MSFLMTEARQ HNTEIRMAVN KVADKMDHLM TKVEELQKHS 660
  661 SGNSMLLPSM SVTMETSMIM SNIQRIIQEN ERLKQELLEK SSRIEEQNDK ISDLIERNQR 720
  721 YVEQSNLMME KRNNSLQTAT ENTQARILHA EQEKAKVTEE LAAATAQVSH LQLKMTAHQK 780
  781 KETELQLQLT DNLKETDLLR GHVTRLQADL SELREASEQT QTKFKSEKQS RRQLELKVTS 840
  841 LEEELTDLRA EKTSLEKNLS ERKKKSAQER CQAEAEMDEI RKSHQEELDR LRQLLKKARV 900
  901 STDQAAAEQL TLAQAELQSQ WEAKCEQLLA SARDEHLQQY REVCAQRDAH QQKLALLQDE 960
  961 CLALQAQIAA FTEQKEHMQR LEKTKSQAPA GRAAADPSEK VKKIMNQVFQ SLRGEFELEE1020
 1021 SYDGGTILRT IMHTIKMVTL QLLNHQEEEE EEEEEEEEEK KPLRPSLEQP GPATPGMPPA1080
 1081 PPSGETQEAP EVLPEQVVGE TTPLPLQALP TPENGAQTRK GEPAEAEVPS EIKDSSLPPQ1140
 1141 PAGIPAHSLS GDEEDELFKG ATLKVPRPTA QPEEEDEDEV SMKGRPPPTP LFGDDDDDDD1200
 1201 DDIGWLG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle