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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94368817
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTEQSECA SRAVLLRVTF TATSARQCGG KEQPAAKGIR TAVYRPRRSQ IRISGGVESG  60
   61 GLEWAGPAED LPRKRQLDEW LVRVGKAGGG DPGGGGRSPA PRQKVPRLHT RARSQRAAGA 120
  121 DGGRGGRRQG RSVCSCSGAA SRWRLGRLPS CGSAAAAAAA LALSLSLSRL PLQVESKPAK 180
  181 MDIYDTQTLG VVVFGGFMVV SAIGIFLVST FSMKETSYEE ALANQRKEMA KTHHQKGEKK 240
  241 KKEKTVEKKG KTKKKEEKPN GKIPEHDLDP NVTIILKEPV RVSAVAVAPT SVHSSVGHTP 300
  301 IATVPAMPQE KLASSPKDRK KKEKKVAKVE PAVSSIVNSI QVLASKSAIL EATPKEVPMV 360
  361 AVPPVGSKAS SPATSSQGKK GQGAQNQAKK GEGAQNQGKK GEGAQNQAKK GEGAQNQAKK 420
  421 GEGAQNQGKK GEGAQNQAKK GEGGQNQAKK GEGAQNQGKK GEGAQNQGKK GEGAQNQAKK 480
  481 GEGAQNQAKK GEGAQNQGKK GEGAQNQSKK GEGAQNQAKK GEGGQNQAKK GEGAQNQAKK 540
  541 GEGAQNQAKK GEGVQNQAKK GVEGAQNQGK KGEANQNQAK KGEGGQNQTK KGEGPQNQGK 600
  601 KGEAAQKQDK KIEGAQNQGK KPEGTSNQGK KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK 660
  661 KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK KGEGPQNQAK KGEGAQNQGK 720
  721 KGEGAQNQGK KGEGAQNQGK KAEGVQSQSK KGEGTQNQGK KGDGNPNQGK KGEGASNQNR 780
  781 KTDTVANQGT KQEGVSNQVK KSEGSPNQGK KAEGAPNQGK KKDGSPSQAK KVDAAANQGK 840
  841 KSEMAPAQGQ KASMVQSQEA PKQDAPAKKK SGSRKKGEPG PPDCDGPLFL PYKTLVSTVG 900
  901 SMVFSEGEAQ RLIEILSEKT GVIQDTWHKA TQKGDPVAIL KRQLEEKEKL LATEQEDAAV 960
  961 AKSKLRELNK EMASEKAKAA AGEAKVKKQL VAREQEIAAV QARMQASYRD HVKEVQQLQG1020
 1021 KIRTLQEQLE NGPNTQLARL QQENSILRDA LNQATSQVES KQNTELAKLR QELSKVNKEL1080
 1081 VEKSEASRQE EQQRKALEAK AATFEKQVLQ LQASHKESEE ALQKRLEEVT RELCRAQTSH1140
 1141 ANLRADAEKA QEQQQRVAEL HSKLQSSEVE VKSKCEELSS LHGQLKEARA ENSQLTERIR1200
 1201 SIEALLEAGQ AQDTQASHAE ANQQQTRLKE LESQVSCLEK ETSELKEAME QQKGKNNDLR1260
 1261 EKNWKAMEAL ALAERACEEK LRSLTQAKEE SEKQLHLAEA QTKETLLALL PGLSISAHQN1320
 1321 YAEWLQEFKE KGSELLKKPP TLEPSMDIVL KLREAEETQN SLQAECDQYR TILAETEGML1380
 1381 KDLQKSVEEE ERVWKAKVGA AEEELHKSRV TVKHLEDIVE KLKGELESSD QVREHTSHLE1440
 1441 AELEKHMAAA SAECQNYAKE VAGLRQLLLE SQSQLDEAKS EAQKQSDELA LVRQQLSDMR1500
 1501 SHVEDGDVAG SPAVPPAEQD PMKLKTQLER TEATLEAEQT RRQKLTAEFE EAQRTACRIQ1560
 1561 EELEKLRAAG PLESSGKEEI TQLKERLEKE KRLTSDLGRA AIKLQELLKT TQEQLTKEKD1620
 1621 TVKKLQEQLG KAEDGSSSKE GTSV

YRC Informatics Platform - Version 3.0
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