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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115486711, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAAVAAQWE RATDPASAMG AGGGSVVGDR GGNGGGWIRT VESSARKNWI HPHGKILIVV  60
   61 VSTNAPKLPR TLLRNASMAW LLLPRNSIRM LMLVLQLTVL LVDSTSRLHG VGSSSNGTGD 120
  121 DLSALLAFKA RLSDPLGVLA SNWTTKVSMC RWVGVSCSRR RPRVVVGLRL RDVPLEGELT 180
  181 PHLGNLSFLH VLRLTGLNLT GSIPAHLGRL QRLKFLDLAN NALSDTIPST LGNLTRLEIL 240
  241 SLGYNHISGH IPVELQNLHS LRQTVLTSNY LGGPIPEYLF NATPSLTHIY LGYNSLSGSI 300
  301 PDCVGSLPML RFLWLSDNQL SGPVPPAIFN MSSLEAMFIW NNNLTGPLPT NRSFNLPMLQ 360
  361 DIELDMNKFT GLIPSGLASC QNLETISLQE NLFSGVVPPW LANMSRLTIL FLGGNELVGT 420
  421 IPSLLGNLSM LRGLDLSYNH LSGHIPVELG TLTKLTYLYL SLNQLIGTFP AFIGNLSELS 480
  481 YLGLGYNQLT GPVPSTFGNI RPLVEIKIGG NHLQGDLSFL SSLCNCRQLQ YLLISHNSFT 540
  541 GSLPNYVGNL STELLGFEGD DNHLTGGLPA TLSNLTNLRA LNLSYNQLSD SIPASLMKLE 600
  601 NLQGLDLTSN GISGPIPEEI GTARFVWLYL TDNKLSGSIP DSIGNLTMLQ YISLSDNKLS 660
  661 STIPTSLFYL GIVQLFLSNN NLNGTLPSDL SHIQDMFALD TSDNLLVGQL PNSFGYHQML 720
  721 AYLNLSHNSF TDSIPNSISH LTSLEVLDLS YNNLSGTIPK YLANFTYLTT LNLSSNKLKG 780
  781 EIPNGGVFSN ITLISLMGNA ALCGLPRLGF LPCLDKSHST NGSHYLKFIL PAITIAVGAL 840
  841 ALCLYQMTRK KIKRKLDITT PTSYRLVSYQ EIVRATESFN EDNMLGAGSF GKVYKGHLDD 900
  901 GMVVAIKDLN MQEEQAMRSF DVECQVLRMV RHRNLIRILS ICSNLDFKAL LLQYMPNGSL 960
  961 ETYLHKEGHP PLGFLKRLDI MLDVSMAMEH LHYHHSEVVL HCDLKPSNVL FDEEMTAHVA1020
 1021 DFGIAKLLLG DDNSAVSASM PGTIGYMAPE YVFMGKASRK SDVFSYGIML LEVFTGKRPT1080
 1081 DAMFVGDMSL RKWVSEAFPA RPADIVDEAA AVAVSDRDEA VGSGGAGGGG DNDWLARRQG1140
 1141 WHEGAAAVVG TRRWGAAAAA AAPVAVGTTA GFIAAYGKAN IPQESVNLFR CPHHHRRFRP1200
 1201 PPPPLPIAVH AAAPAKRKAG GRERERDKGK RGEEEGKERE DDMWVPHNTF LLCE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle