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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113644571, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.08
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATARARR PHVLCFLLLV MVMPCAISAA DLASDGRGRL YQVAMDQAAR ALAEARAARR  60
   61 DDPRDGVARR GAAQAWADCD QLVAFAVGHL NRTVAAAARG VDGDDVAAWL SAARTTVGTC 120
  121 LDGFGELGAS PGPEFAAALA NVSRLVTDAL AATALRRGTE NGARAATNSG DGDGRMLPLD 180
  181 MARPGDADVV VAKDGTGHFC TVGEALKAAA RRATNGGGRT VVYVKAGVYN ENVEVWTTNL 240
  241 MLVGDGIGRT VITGSRSVRG GYTTFSSATF GTPRSSLSLL ASCECECVTL TWMDVHEAVN 300
  301 ADGFVACGVT FRNAAGAGSG QAVALRASGD RVAFYRCSFE GHQDTLYAHT LRQFYRECAV 360
  361 AGTVDFVFGN AAAVLQRCSI RVRRPPLPGQ PAVVTAQGRV DRYERTGFAI HGGRVTAAAR 420
  421 FGAPGAAASA PFEAYLGRPW KEFSRVVYME AYMDATVGAA GWLAWDGTAF AQSTAFYGEY 480
  481 RNSGPGSGTE GRVRWGGYHV ITDPGVAAEF TAGEMVNAGE WLGSTGKSSP AIPYTEFVRH 540
  541 PLSSISETGD GRRCSRYYPG HDGATWTVAA AGDGAAANPR RRHEPQRQRQ EKKNGVPALG 600
  601 QEEQEACTPR VPTPSSLQEL TNDAFSGDER KRNKRMRKIT RERARRFRFT PYNAAAGRRP 660
  661 RASAMSPHGA MGVAAAGTPL KAEEMAGGCT GWISVGPSAT GWNGENLAAN CSAGINYCKW 720
  721 GSFSRKADLF EWPDAAKVSD RDKEHASNEV HREPRTVVEV AKSLKKKISL YGNETDRVAL 780
  781 LEFKQAVCLD PKQTLMSWND SIHFCNWEGI LCSLRIPYRV TSLNLTNRGL VGQISPSLGN 840
  841 LTFLSILSLT ENSFSGQIPA SLGHLNHLQT LWLSNNTLQG VIPDFTNCSS MKALRLNGNN 900
  901 LVGKFPQLPH RLQSLQLSYN HLSGTIPASL ANITRLNVLT CTYNNIQGDI PHEIGKLSSL 960
  961 QFLYVGANKL VGRFPQAILN LSTLIGLSLG FNNLTGEAPS NLGNCLPNLQ LLELEDNCFQ1020
 1021 GQIPSSLINA SKLYRLELAS NNFTGVVPRS IGKLTKLSWL NLQSNKLQAR NKQDWEFLDS1080
 1081 LANCTELKAF SIASNHLEGH VPTSLGNLSV QLVQLFLSGN QLSGGFPSGI ANLPNLIYIG1140
 1141 LDNNQFTGAV PKWLGTLSNL QQILLHENMF TGFIPTSLSN LSVLGSLWLD YNKIGGPLPA1200
 1201 SLGNLQTLET LSISNNKLHG SVPMEIFRIP TIRLIDLSFN NFDGQLSARV GNAKQLMYLY1260
 1261 LSSNNLSGDI PSSLGNCESL EGIKLGSNIL SGSIPTSLGN IRSLKVLNLS HNNLSGSIHA1320
 1321 NLGKLWLLEQ VDLSFNNLSG EIPTEGIFLN ATAVHINGNE GLCGGALNLH LPTCYVMPLN1380
 1381 SSRSERSILL YLVILFASLV SVIFIYLLLL WRGKQKKKCT SLTPFDSKFP KVSYNDLAKA1440
 1441 TEGFSASNII GRGIYSHVYK GELFQGRDVV AVKVFSLETE GAEHSFITEC NALRKVRHRN1500
 1501 LVPILTVCSS LDTKGNDFRA LVYKLIPQGD LYSLLHSTRD SENGFTSNII TFSQRLSIVV1560
 1561 DIADALEYLH HNNQETVVHC DIKPSNILLD NDMKAYVGDF GLARLKADAA VPSVGDSNST1620
 1621 SMIAIKGTIG YVAPEYASGG QVSTAADVYS FGIVLLEVFL RKGPTDDMFK DGLDIAKFVS1680
 1681 MNFPDKILDI VDPVLLQDEL DCSKESPVAM KEIFSEGLHS VLNIGLCCTK QSPYERMDMR1740
 1741 EVAAKLHGTR RHISEATSYF STLILKSEGQ LHSSTYSSKQ LSCCGIFLTK RDTNSFTGEI1800
 1801 PLSLGHLHHL QNLYLSNNTL QGKIPDFTNS SNLKVLLLNG NHLIGQFNNN FPPHLQGLDL1860
 1861 SFNNLTGTIP SSLANITELL GVGFMSNNIK GNIPNDFSKF VSIGYLAASQ NMLSGRFPQA1920
 1921 ILNLSTLDVL YLGFNHLSGD LPSNLLDSLP SIEILSLGGN FFQGHIPCSV VNSSNLGLLD1980
 1981 ISSNNFTGLV PSSIGKPTKL YHLNLQSNQL QAHRKQDWDF MNGLTNCTRL QMISIANNRL2040
 2041 QGHLPSSLGN LSSQLGMLHL GGNQISGVLP SDIENLSSLT YFRIDTNEIT GKITSLEVLK2100
 2101 FSHNNLTGPI PSLLGDLHFL EQLDLSFNHL KATEGFSSSN LIGKGRYSYV YVGKLFQDNI2160
 2161 VAVKVFSLET RGAHKSFMAE CNALRNVRHR NLLPILTACS SIDSEGNDFK ALVYEFMSQG2220
 2221 DLHKFLYTTR DDINLSNLNH ITLAQRISIV VDVSDALEYL HHNNQWTIVH CDLKPSNILL2280
 2281 DDDMIAHVGD FGLASYKTNS SMPSLGDSNS TSSLAIKGTI GYIAPECSHG GQVSTASDVY2340
 2341 SFGVVVLEIF IRRRPTDDMF KDGLSIAKYA EINFPDRILE IVDPQLQLEL DGQETPMAVK2400
 2401 EKGLHYLHSV LNIGLCCTKM TPSERISMQE AAAKLHGIRD AYLRGN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle