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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113639650, gi...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGTGPGAE LLSPGEAEWP PELRLPPPPP PHPPPPPPLE PAPPSTPQLR GEASPPPPPP  60
   61 PPVGPPGAAV VAAAARKEAS ASAEGFDDSH FLGSIMGAPA HQHQHQHQQP PAVGPPVVVK 120
  121 RKRGRPPKNR DGAAPPPPPK PVKKREDDED VVCFICFDGG NLVVCDKKGC TKVYHPACIK 180
  181 RDESFFRSRA KWTCGWHLCS TCEKAVQYMC YTCTYSLCKG CIKQKPVKFF GVRGNKGFCD 240
  241 TCYSTILLIE SKDDRAKAKV DFDDKNNWEY LFKLYWLDLK GKHSLTLEEL VNAKSCWTVR 300
  301 STSARREKED SSNDLYDANF DLDASSDGAS RKRRRNSFSG KRGRKRQNNG AESLPKRVQN 360
  361 EGMTFIGDTQ WASSELLEFI GHMRNGDISY ISQFDVQILL LEYVKQKNLR DPRRKSQIIC 420
  421 DARLANLFRK PHVGHFEMLK LLEMHFHAKE TVNGDGQKGI DSDSAQIDSG GYSDMPSKLC 480
  481 SDKRRKIHKK IERESPANLE DYAAIDMHNI NLIYLRRSLL EDLIDDNGTF SDKITGAFVR 540
  541 IRTPCVGQKQ DIYRLVKVLG THKVAERYSV GKKTTDHALE ILNLDKKEVI TMDTISNQDF 600
  601 TEEECKRLRQ SMKCGLITRL KVGDIHEKAK IFQLLRVNDW LENEKQRLSH LRDRASETGR 660
  661 RKQYPFNLVC RVAVPLFISA ICFTNIVVWF SNVRSKICMP MVIID

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle