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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113611888, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCSGNMLR AVHVLAIAAA VLTLAPLAAS YPWQACNGSS NYTANSAFQR NLGVLAAALP  60
   61 GNASTSPDLL ANATVGGAPD TVYALAFCPP IDNQNASGCR ACVASAFADA RSLCPNNRGA 120
  121 HIIYDGCVLT FSGRDFLGAA TNPADMERKL RNTENVTVSD VGEFNGAIYE VLNATADYTA 180
  181 AAARRFGTGE ISFDPTYPVI YSMAWCTPDM APGRCRACLA DTIAQMHAYF NPNAQGARLV 240
  241 GVRCAARYEI YPFYTGRGMV QVPVSRPPAV PGTPGKKSKT GKILAIVLPI VAALLASAMI 300
  301 CFCCWRRRTK ATKLSLSYSS RSEDIQNIES LIMDLPTLRI ATDNFAENNK LGEGGFGEVY 360
  361 KGSFPGGQTI AVKRLSQSSG QGIGELKNEL VLIAKLQHKN LVRLVGVCLE QEEKLLVYEY 420
  421 MPNKSLDTFL FDPEKRKQID WAKRFMIIKG ITGGLQYLHE DSQLKIIHRD LKASNVLLDA 480
  481 NMNPKISDFG LARLFGDDQS QETTNRVVGT YGYMAPEYAL RGQYSIKSDV YSFGVLLLEI 540
  541 ITGRKNSDSY NSEQAVDLLS LVWEHWAMKT ITEMVDPYLR SDSSSLDEIL RCIHVGLVCV 600
  601 QEDPMDRPTL SMINIMLDGN TVSAKAPSRP AFFTEMLGNI NIGSSMYSQP YPVTDSTAKH 660
  661 STAMSLNDVT VTEPEPR

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