YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113611702, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDAPSAAA AEGSQHASAA EGGSAAAAAS AAPAAKAAEA LLPSLSIWPP SQRTRDAVVR  60
   61 RLVQTLVAPS ILSQRYGAVP EAEAGRAAAA VEAEAYAAVT ESSSAAAAPA SVEDGIEVLQ 120
  121 AYSKEVSRRL LELAKSRAAP SPAAAAPAEG AASESEAAAA PAPAEDCYVV LNGIPVISAM 180
  181 FFHKCELMIK QDNCIFALAI PLTAVVTSVT VTARVEVELS GGWDEIGLGL SGFGVLFSFL 240
  241 GIIMLFDKGF LAIGNILFVS GVSLTIGPKS TVQFFTKPKN HKGSIAFGIG FFLVLIGWPF 300
  301 FGMLAEAYGF VKLFRGFWPT AAVYLQKSPT FGWIFHHPLV TSVQGKTSPG VIVALLLELD 360
  361 HSKGCRVTSK ET

Type	Start	End	Confidence
Cytoplasmic	1	193	0.73
Transmembrane Helix	194	215	0.78
Non-Cytoplasmic	216	225	0.50
Transmembrane Helix	226	246	0.88
Cytoplasmic	247	249	0.44
Transmembrane Helix	250	272	0.74
Non-Cytoplasmic	273	282	0.40
Transmembrane Helix	283	310	0.78
Cytoplasmic	311	372	0.47