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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115472135, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILTVLPLV LVMLLLPLAA IASGDPPWQH YCGSSGNYTA GSKYQANLQA LAATLPSTAS  60
   61 SSSPALFAKD AAGGGDAEPD RVFALTLCRG DTASANASSS SCADCASRAF RDAQSVCPYS 120
  121 KEVAVYYDPC LLYFSGDDFL SSPANPAQVR LYDVDRSTRR GGGGADFVTL VRALLSYTMQ 180
  181 WAVPYNSTGG GAAAVRWYTT VRMDVVTPPL FSLMQCTPDM SGGDCRQCLQ DLVGNTTFNG 240
  241 SVSGVRNIGA RCGYRYDTYK FYGGEPKLKI GSLSEINSTA PSSPPPPPPV TETRSGRKKV 300
  301 LTVALLVPLI ALCPVVIFCF AWIRRLRNHK SMLRKKDTMA REEVLKLWRL EESDSEFMLF 360
  361 DFSQIEDATS NFSEDKKLGE GGFGSVYKGQ LPNGLEVAVK RLAAHSSQGL VEFKNEIQLI 420
  421 AKLQHTNLVN LRGCCIQGEE NLLIYEYMPN KSLDFFIFDL KRAALLNWKT RLNIIEGITQ 480
  481 GLLYLHKHSR LCIIHRDLKA SNILLDRDMN PKISDFGLAK IFDSNDVQRN TKRVVGTYGY 540
  541 MAPEYASEGC FSLKSDVFSF GVLVLEIISG KRNAGFHQYG DFFNLLGYAW QLWKDGSWHE 600
  601 LVDPSLVSEG QMMEIKKCMK VALLCVQENA VDRPTMSAVV KMLSSELKIL PEPKQPAFFN 660
  661 VRVKHGELSN TAPSSINDVT ITIVNGREMS IRRREIFLQS SSMRQMVATR RSRLRPCRRG 720
  721 CLWNGVARCY PMCRALYFAA PEIEPSPEWK HEYTGSAAAR SNKSTANLGG APRSHKATNL 780
  781 FAAPVRIDNY SMCAITRVHD AIYGSGRISS GSMSRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle