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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115470615, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMNLDWRKL IRHELKSMYT SFQNPERRRF RRKPVTPIED TETAYAYTRA VCVTDGGAHL  60
   61 PLSPTPPRGA RHLLGEMRQW WSMLQRGAHS LQSPPPPPPS CCASRLRGRL VPPPMAGLSS 120
  121 VVAAMAASVA RVLLAAAVFF AAVAAAAAAS SSAAAVAALM EFKTKLDDVD GRLSSWDAAG 180
  181 GSGGGDPCGW PGIACSAAME VTAVTLHGLN LHGELSAAVC ALPRLAVLNV SKNALAGALP 240
  241 PGLAACRALE VLDLSTNSLH GGIPPSLCSL PSLRQLFLSE NFLSGEIPAA IGNLTALEEL 300
  301 EIYSNNLTGG IPTTIAALQR LRIIRAGLND LSGPIPVEIS ACASLAVLGL AQNNLAGELP 360
  361 GELSRLKNLT TLILWQNALS GEIPPELGDI PSLEMLALND NAFTGGVPRE LGALPSLAKL 420
  421 YIYRNQLDGT IPRELGDLQS AVEIDLSENK LTGVIPGELG RIPTLRLLYL FENRLQGSIP 480
  481 PELGELTVIR RIDLSINNLT GTIPMEFQNL TDLEYLQLFD NQIHGVIPPM LGAGSNLSVL 540
  541 DLSDNRLTGS IPPHLCKFQK LIFLSLGSNR LIGNIPPGVK ACRTLTQLQL GGNMLTGSLP 600
  601 VELSLLRNLS SLDMNRNRFS GPIPPEIGKF RSIERLILSE NYFVGQIPPG IGNLTKLVAF 660
  661 NISSNQLTGP IPRELARCTK LQRLDLSKNS LTGVIPQELG TLVNLEQLKL SDNSLNGTVP 720
  721 SSFGGLSRLT ELQMGGNRLS GQLPVELGQL TALQIALNVS YNMLSGEIPT QLGNLHMLEF 780
  781 LYLNNNELEG EVPSSFGELS SLLECNLSYN NLAGPLPSTT LFQHMDSSNF LGNNGLCGIK 840
  841 GKSCSGLSGS AYASREAAVQ KKRLLREKII SISSIVIAFV SLVLIAVVCW SLKSKIPDLV 900
  901 SNEERKTGFS GPHYFLKERI TFQELMKVTD SFSESAVIGR GACGTVYKAI MPDGRRVAVK 960
  961 KLKCQGEGSN VDRSFRAEIT TLGNVRHRNI VKLYGFCSNQ DCNLILYEYM ANGSLGELLH1020
 1021 GSKDVCLLDW DTRYRIALGA AEGLRYLHSD CKPKVIHRDI KSNNILLDEM MEAHVGDFGL1080
 1081 AKLIDISNSR TMSAIAGSYG YIAPEYAFTM KVTEKCDIYS FGVVLLELVT GQSPIQPLEQ1140
 1141 GGDLVNLVRR MTNSSTTNSE IFDSRLNLNS RRVLEEISLV LKIALFCTSE SPLDRPSMRE1200
 1201 VISMLMDARA SAYDSFSSPA SEAPIEDDSS LKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle