YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115469740, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSSSTSLV SLLLPCLLSL LLIRLSTHLN PDPTAAAPRF KRTPPFPLRF RHDGAFKILQ  60
   61 VADMHFGNGA ATRCRDVAPE VGGARCSDLN TTRFLRRVIE AERPDLIAFT GDNIFGGSAS 120
  121 DAAESLLKAI SPAIEYKVPW AAILGNHDQE STMTREELMV FMSLMDYSVS QVNPPGSLVH 180
  181 GFGNYHVSIH GPFGSEFVNT SLLNLYFLDS GDREVVNGVK TYGWIKESQL AWLRATSQEL 240
  241 QQNLHAPAFA FFHIPIPEVR GLWYTGFKGQ YQEGVACSTV NSGVLGTLTS MGDVKAVFLG 300
  301 HDHLNDFCGD LNGIWFCYGG GFGYHAYGRP HWPRRARVIH TELKKGQKSL VEVESIHTWK 360
  361 LLDDEKLTKI DEQVLWRHSS I

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	381	0.98