YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115464249, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSPPLHASAV SKLQTPPKNP PKPKGKRKKI TLRSRVAHDT TEPAKPPIRH PAAPAIYSRV  60
   61 AACPPALVLA RVRKGEGGDR PAMDWSAVTA EDLVDALREV DWSTPPRPVP EFFSRFTVPR 120
  121 SYSKWTSRLK CNLYYYRTNY FILIMFILGI GFIWKPVAIL AAFMTGISIA FLNDSFAVTF 180
  181 NEKVTRTVRQ FSPHLAAKMR PPITPVLRGR PSSKRSIHIC GRPRWLFVLL FSAVSCMLWL 240
  241 TSCSLLTVLW ALLIAIFATL LHASFRTPNL KARLNTFREE FRAVWRNYSE L

Type	Start	End	Confidence
Cytoplasmic	1	132	0.99
Transmembrane Helix	133	153	0.93
Non-Cytoplasmic	154	158	0.76
Transmembrane Helix	159	180	0.91
Cytoplasmic	181	222	0.95
Transmembrane Helix	223	241	0.92
Non-Cytoplasmic	242	246	0.68
Transmembrane Helix	247	265	0.91
Cytoplasmic	266	291	0.86