YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113578789, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPAATACL PASPSLGPRS LRLLRGALAR RGSRRLGVVR AASAEVAAPD AAAAAPGYTS  60
   61 DSLILYFKAE GTMEERAIPK ITQALEGVEG VSDLEVLIEE GIGSVVLTKE TTVQATGVAS 120
  121 NLVEAIQGAG FKLQTLSLSF DDFNEDAATV AGEDDDQATD QPVNMPFTWL PLPHILFVVV 180
  181 WTLKNQTSSL RGGFSVSAEG TQMPHWITKE REKGKNEGDE KEKGQGLKEK EMHYSKPTSA 240
  241 SSRLHSFDPC NRCITSLRYH EPTIGCTVSS VADKTLAQDN VKPRTVSNQR GEDDEDITRS 300
  301 DKTMAILYIH KSKVLAWVKE KRPSTRNAWM IKEVDCFRYS GGERFR

Type	Start	End	Confidence
Signal Peptide	1	17	0.87
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	346	0.97