YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125551734
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDLGPPTV LQKIHGQSMM FSKISPYSLM KNPALYNANT SYSVPLKSYN GMDGNNGFSS  60
   61 VTSVSPVFAS APKEKGLSGF MIDFMMGGVS AAVSKTAAAP IERIKLLIQN QDEMIKSGRL 120
  121 SHPYKGIADC FGRTIKDEGV IALWRGNTAN VIRYFPTQAL NFAFKDHFKR MFNFKKDKDG 180
  181 YWKWFAGNLA SGGAAGACSL FFVYSLDYAR TRLANDAKAA KKGGGRQFNG LVDVYRKTLA 240
  241 SDGIAGLYRG FNISCVGIIV YRGLYFGMYD SLKPVVLVGN LQDNFLASFL LGWGITIGAG 300
  301 LASYPIDTVR RRMMMTSGEA VKYNSSLDAF KQIVAKEGAK SLFKGAGANI LRAVAGAGVL 360
  361 AGYDKLQVVV FGKKYGSGGG

Type	Start	End	Confidence
Cytoplasmic	1	79	0.72
Transmembrane Helix	80	99	0.34
Non-Cytoplasmic	100	183	0.56
Transmembrane Helix	184	204	0.71
Cytoplasmic	205	244	0.77
Transmembrane Helix	245	265	0.78
Non-Cytoplasmic	266	284	0.91
Transmembrane Helix	285	306	0.93
Cytoplasmic	307	380	0.87