YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113549943, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILIQAKLH SAEEIHPNPQ NFPRAHTDKT ASALAKTKTG QRATRYPSTA TATPTPAPIP  60
   61 QNSNPEDQIG RQKGARGRDG ARDSLAHLGG QEKARGRSSI PTGGGAEISR RPRRLRAPRR 120
  121 DRRRRQEKSR VVAVGAEADE EETGNPTTRE AKIPLPAPHA SAMGESPPSI FDRTVRNHPQ 180
  181 LTMGFFLGPL GLQLGPFVCM WLKPTRRELC PRLVSSPAKL TDDATPPQPP PQPQPGDRRR 240
  241 RPRLPDPPRP HGGKAVPLSG LSPQDTCKAV ADPYIECEFM IILIDLILHK TRAYRHLLFN 300
  301 KLRIYSSLDK VLGDALLGNI VFMTMLFLEV QFILKLSFDI RRYREVLLAV IISSYFKLFL 360
  361 MAMMVWEFPS SVIFFVEISV LSSNTVALRV VTEFSKAHCF GVCFGAHAAR YLTERWLLGA 420
  421 P

Type	Start	End	Confidence
Non-Cytoplasmic	1	311	0.74
Transmembrane Helix	312	334	0.69
Cytoplasmic	335	345	0.73
Transmembrane Helix	346	366	0.82
Non-Cytoplasmic	367	421	0.45