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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113548993, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPLYLKGHV DGKPVSRMLV DGGAAVNLMS YSLCKKLGRE DDELKKTNMI LNGFNGEPTE  60
   61 AKGIFSAELT VGNKTLPTAF FIVDVQGIVL EIYTDDIVVK SDGMEAHIAD LRLAFERMRR 120
  121 YGLKMNPLKC AFGVSAGKFL GFMVHERGVE IYPKKIEKIR DFKAPTCKKE VQKLLGKVNY 180
  181 LRRFISNLAG KIDAFVPILR LKKEADFTWG AKQQEAFEEL KRYLSTPPVV RVPKAGKPFR 240
  241 LYIASEDKVI GAVLTQEEDG KEYIITYLSR RLLDAETRGC EACQRFGNVQ LAPAVVLNPI 300
  301 IKPWPFRGWA LDFIGQIYPS SSKGHRFVLV ATDYFTKWAE AVPLKNMTHT EANGQAESSN 360
  361 KTLLKLVKKK IEEHPKRWHE VLSEALWAHR ISKHDATKVT PFELVYGQEA VLPVEVNLGS 420
  421 LCYIKQDDLS SEDYKTLMGD NLDEVIDKRL KALEEIEKEK KRVAKAYNKS VKAKLFQVGD 480
  481 LVWKTILPLG TRSKEFVCAV NRPPPLRECD ISFLSSPHLL SHFHMNLGKA THSTFSPASS 540
  541 PDQACRRSSP EVRLQAQLLH RQYLVPTLTH RADTHTTHMG SSVKDAGGGK EEQQQQLESP 600
  601 LLEAAVSSGG GDGGGGHGVS GELESILGDE TVPWARRMWA ATGVEMRLML RLAAPAVLVY 660
  661 MINYLMSMST QIFSGHLGTL ELAAASLGNT GIQVFAYGLM LGMGSAVETL CGQAYGAHKY 720
  721 DMLGVYLQRS TVLLMATGVP LAVIYAFSRP ILVLLGESPE IASAAAVFVY GLVPQIFAYA 780
  781 ANFPIQKFMQ AQSIMAPSAY ISAATLAFHL VLSYLVVYQF GLGLLGASLM LSISWWVIVV 840
  841 AQFIYIVTSR RCRLTWTGFS MLAFSGLPDF FKLSLASAVM LCLETWYFQI LVLIAGLLKD 900
  901 PEMALASLSV CMTISGWVFM ISVGFNAAAS VRVSNELGAG NPKSAAFSVV VVTVLSFFLS 960
  961 VVISLVILLC RDYISYIFTD GEDVATAVSK LTPLLALTLI LNGIQPVLSG VAVGCGWQAF1020
 1021 VAYVNVGCYY IVGIPLGCLL GFYFDLGAAG IWSGMIGGTL MQTLILMWVT FRTNWNREVE1080
 1081 EAMKRLNKWE DKTPLLSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle