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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113548600, gi...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVVGLVQLL VAFVVAWEAV ELVLRHGLLL SLFKFALAAA LAVAASFVAA LFLARVVAWV  60
   61 LRRTAKLSIG CRSFSFNYLR DITIKSPKGA VDSICVGEIR LGLRRPLTQL GFTILNHGPI 120
  121 LQLQISDLDI VLRQPAKSAK KKKPPPRKST STSPAKGKGK PKGQGKWRLI TNIASLLSLS 180
  181 IVELRFKAPK AALGIKDLKI DLSKTGGLDP ILNVEIHILP LFVQALEPDG IDNSTSVFSK 240
  241 LDWWVSGQYC SAMDTADCSS FLFEDIVLLC DLHQRGKGVG VKNLDLVIGP IVVNLEEKLF 300
  301 TKKKLSAPTV AEKTDEPAAD VKSDTKSEGS KLSSFNKKID LLPEKVSFNM SKLDLKFLPK 360
  361 DHGLLINNEI GGISVRFVKS QPHSDFGEAT HLQLETDVSD IHLLMDGATS VLEVVKVATV 420
  421 VSANIPIQST SPIRAEAGIK ISGSQCNIII SRIKPLIPLN SAQKKPTVPR ESSTQEKTPK 480
  481 EKLALDLVFT LSAPELTIVL YSLDDIPLYH CCLLSTHFAA SKTVNQGTEL HAVLGELKLI 540
  541 VAGKPQQSIK DRISGTLLQI SRSTIDLEQK VPDKDNCIDN PKSSLSLNIS GVRMNVCFYY 600
  601 LELLCTTAMS YKVFLKSIRP PKKRPAQGTS QKTTKNAKGA QIVKISVEQC AVLYVGDMIL 660
  661 EDMSIQDPKR VNFGSQGGHV VIINDADGSP RMAYVNSTSL PDHKHVNFFT SIEINQIGLC 720
  721 LNKEKQSVQV ELGRSRLTHK EDLLDDKPVE EVTLFDVQKV KFVRRSGGSN DSAVCALINV 780
  781 TEVAVWWEPD PYLELLEVAT RLKSIMHRIK HQNSANEIKD DTVYTDTLAK KDSLTEHGQQ 840
  841 EKPQKKQELV IAVDVESLKI SGELADGVEA MIHVGSIFSE NAKIGVLIEG LVVSFCGARI 900
  901 FKCSRTQLSR IPVSISDSLP DKKLQSAATC DWVIQCRNAY VCLPFRLQLR AIDDAVEDTL 960
  961 RAIKLISAAK MSVLFPEKKS SGSSSSSKKS KSKSTEFRYV RVIVRDLVAE IEEEPIQGWL1020
 1021 DEHIDLMKSV FNESTVRLDL LDELASVKHK DSPKAKLDGS SSEKNNGCPE VDGDAPGVCS1080
 1081 FEKLREDIYK QAFQSYYLAC QALKVSEGSG ACSSGFQSGF KMSTRRSSVM SVCAKDVDVS1140
 1141 LSKIDGGDEG MIGFIKTMDP VCAKNDIPFS RLYGSNFTLK AKSLSAYLRD YTFPLFSGTS1200
 1201 AKCNGRLVLA QQATCFQPQV RQDVYVGKWW RVNLLRSATG YTPPMKSYVD LPLHFQKGEV1260
 1261 SFGVGYEPVF ADVSYAFTCA LRRANLAKRW FFERPEPPRR ERSLPWWDDM RNYIHGKFRL1320
 1321 DFTKTTWHLP AKTSPYEKLD QMLITSDYLE ICYVDGYVSL YSKYLKVYLT SLESLAKKCS1380
 1381 LETPHHEVIP FLETPSFFMD IAIQWGCDSG NPMDHYIFAL PAEGKPRDKV LDPFRSTSLS1440
 1441 LKWSFSLKPS TTEPVKHQQN IQAVSNNSPT VNVGAHDFVW LMKWVNIFFL PPHKLRLFSR1500
 1501 FPRFGVPRFI RSGNLPLDRV MTEQFIRFDA SLLQINNMPL QVDDPANGLT LHFTKFRLEI1560
 1561 AFSRGKQIFT FDCKREPLDL VYQGIDLHLL KVSIKKTPEP SISKDAQVEN KSLHMKATDS1620
 1621 PGKNKTSSTE KSRDDGFFLY SDYFTIRKQT PKADAARLSA WQEDGRKKSE MPLAKSEFDG1680
 1681 GEESDHAQSG SDEEGFNVVV ADSCQRVFVY GLKILWNLEN RAAIVSWVGD LTQAFQPPKP1740
 1741 SPSRQYTQRK ILEKKQSTKE AEMSNDGTLS SSPLASQSSD PPKQTKSSEP PSSGPSKLES1800
 1801 TSTSDTAMKT SNSSDSEEEG TRHFMVNVVQ PQFNLHSEEA NGRFLLAAGS GRVLVRSFHS1860
 1861 IVHVGQEMFE KALGSSNVAI GETRPEMSWS RYEVSVMLEH VQAHVAPTDV DPGAGIQWLP1920
 1921 KIHRRSSEVK RTGALLERVF MPCQMYFRYT RHKGGNPELK VKPLKELAFN SPDITAGMTS1980
 1981 RQFQVMMDVL TNLLFARAPR TKKSNLSYPL DNDDDDDTGE ESDAVVPDGV EEVELAKIDV2040
 2041 EIKEREWKIL LDDIRTLSVG SEISADETQT PKSDDATWIV TGSRASLVKC LKKELVNVRN2100
 2101 GRKEVSSMLR VAMHKAAQAR LMEKEKNKSP SFAMRVSLKI NKVVWSMLAD GKSFAEAEIN2160
 2161 DMIYDFDRDY KDIGIAHLTT KLFVLKNGLA NAKSDTVLAP WNPPSEWGKN AMLRVNARQG2220
 2221 APTGGNSVIE SLLVDIYPLK IYLTEAMYRM MWGYFFPGDE QHPQKRQELF KVSTTAGTRR2280
 2281 VKKSTSIAET NSPSKQSSKD SMLLQKPELR RTSSFDRTWE ETVAESVANE LVTQFQSQSN2340
 2341 APPESQDAPK EAKLVRSARS TREEKKNMDP NEVKQTRPQK MMDFRNINIS QVELQLTYEG2400
 2401 LPFAVSDGKK FKAKSTSQKE PTASLIAASD FNLSDSDGDE AGGSDQLPAF LKKPNDGAGD2460
 2461 GFATSVKGLF SSQRKKAKAF VLKTMKGDAD HDFQGERSEN EIEFSPFARQ LTITKTKKLI2520
 2521 RRHTKKIKSK VPKGAATSQE LGSELPPRGP SGNQTDSSSS DDNDSSPTET NPKD

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