YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115451725, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVAAGTGQ LIGVAVATLL AAIFLAAALL GSRRRRRRAP LAGKPAAVGG CGVADGEGCG  60
   61 GDGRTDVIVV GAGVAGSALA YTLGKDGRRV HVIERDLTEP DRIVGELLQP GGYLKLIELG 120
  121 LEDCVQEIDA QRVLGYALFK DGKDTKLSYP LEKFHSDVAG RSFHNGRFIQ RMRQKAASLP 180
  181 NVQLEQGTVT SLVEEDGTVK GVKYKTKSGE ELKAYAPLTI VCDGCFSNLR RALCSPKVDV 240
  241 PSCFVGLVLE NCQLPHANHG HVVLANPSPI LFYPISSTEV RCLVDVPGQK VPSIANGEMA 300
  301 KYLKTVVAPQ IPPEIYDSFI AAIDKGSIRT MPNRSMPAAP HPTPGALLMG DAFNMRHPLT 360
  361 GGGMTVALSD IVVLRNLLKP LRNLHDASAL CKYLESFYTL RKPVASTINT LAGALYKVFS 420
  421 ASPDQARNEM RQACFDYLSL GGVFSNGPIA LLSGLNPRPL SLVAHFFAVA IYGVGRLMLP 480
  481 LPSPKRMWIG VRLISSACGI IFPIIKAEGV RHMFFPATVP AYYRAPRPME

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.84
Transmembrane Helix	8	31	0.86
Cytoplasmic	32	433	0.87
Transmembrane Helix	434	454	0.81
Non-Cytoplasmic	455	460	0.80
Transmembrane Helix	461	480	0.92
Cytoplasmic	481	487	0.91
Transmembrane Helix	488	507	0.88
Non-Cytoplasmic	508	530	0.84