YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115459700, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.99
Transmembrane Helix	97	116	0.94
Non-Cytoplasmic	117	123	0.73
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	164	0.92
Transmembrane Helix	165	187	0.90
Non-Cytoplasmic	188	212	0.95
Transmembrane Helix	213	235	0.90
Cytoplasmic	236	275	0.95
Transmembrane Helix	276	294	0.89
Non-Cytoplasmic	295	325	0.82
Transmembrane Helix	326	354	0.82
Cytoplasmic	355	373	0.87
Transmembrane Helix	374	392	0.91
Non-Cytoplasmic	393	442	0.91
Transmembrane Helix	443	464	0.90
Cytoplasmic	465	469	0.83
Transmembrane Helix	470	492	0.90
Non-Cytoplasmic	493	517	0.85
Transmembrane Helix	518	537	0.84
Cytoplasmic	538	555	0.87
Transmembrane Helix	556	579	0.90
Non-Cytoplasmic	580	611	0.87
Transmembrane Helix	612	634	0.86
Cytoplasmic	635	652	0.72
Transmembrane Helix	653	676	0.88
Non-Cytoplasmic	677	684	0.75
Transmembrane Helix	685	706	0.87
Cytoplasmic	707	726	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGVRLIVVSE RCCCFRREDS TAAAATGAAA DVSELELLVP RGGASSGAAG SMDRHALGGG  60
   61 GALEIEKTPE AAEDMESEPA LAAAREAERV PPWREQVTAR GMVAALLIGV VYTVIVMKLS 120
  121 LTTGLIPTLN VSAALLAFLA LRGWTHALDR LGIASRPFTR QENTVIQTCA VACYTIGYGG 180
  181 GFGSFLLGLN KKTYELSGAS TPGNVPGSYK EPGIGWMTGF LLSTSFVGLL TLLPLRKVLV 240
  241 IDYKLTYPSG TATAVLINGF HTPQGDKNAK KQVRGFLRYF GISFLWSFFQ WFYTGGDVCG 300
  301 FLQFPTFGLK AWKHTFFFDF SLTYVGAGMI CSHLVNLSLL FGAILSWGIM WPLIGKQKGN 360
  361 WYSAKASESS MSGLFGYKSF ICIALLVGDG FYNFVKVIVV TLKSVRERSR RRGLNNRVAD 420
  421 ADTMAIDDMQ RNEVFNRDNI PTWMAYTGYT LLSVIAVVLI PVMFRQVKWY YVIIAYLLAP 480
  481 ALGFCNAYGT GLTDMNMGYN YGKIALFIFA AWAGKDDGVV AGLVGCGLVK QLVLISADLM 540
  541 HDFKTGHLTL TSPRSMLVGQ VVGTLMGCVV APLTFFLFYK AFDVGDPNGY WKAPYALIYR 600
  601 NMAIIGVEGF SALPRHCLQL CAGFFAFAVL ANLARDFLPR RYGRYMPLPM AMAVPFLVGA 660
  661 SFAIDMCAGS LVVFLWHRFD GKRAALLVPA VASGLICGDG IWTFPSSLLA LAKVKPPICM 720
  721 KFIPGN