YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115459506, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.99
Transmembrane Helix	66	86	0.92
Non-Cytoplasmic	87	93	0.72
Transmembrane Helix	94	115	0.89
Cytoplasmic	116	132	0.93
Transmembrane Helix	133	156	0.88
Non-Cytoplasmic	157	178	0.96
Transmembrane Helix	179	200	0.92
Cytoplasmic	201	241	0.97
Transmembrane Helix	242	261	0.89
Non-Cytoplasmic	262	294	0.88
Transmembrane Helix	295	317	0.91
Cytoplasmic	318	353	0.94
Transmembrane Helix	354	372	0.79
Non-Cytoplasmic	373	428	0.81
Transmembrane Helix	429	449	0.92
Cytoplasmic	450	456	0.66
Transmembrane Helix	457	477	0.92
Non-Cytoplasmic	478	497	0.76
Transmembrane Helix	498	521	0.87
Cytoplasmic	522	541	0.86
Transmembrane Helix	542	565	0.92
Non-Cytoplasmic	566	597	0.84
Transmembrane Helix	598	620	0.87
Cytoplasmic	621	638	0.61
Transmembrane Helix	639	662	0.76
Non-Cytoplasmic	663	677	0.71
Transmembrane Helix	678	700	0.56
Cytoplasmic	701	848	0.59
Transmembrane Helix	849	866	0.30
Non-Cytoplasmic	867	882	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAANNSS SAAYDAAETG GLLRRRNTTA AARGNAGEEE EEAEAVAPSV EQAFADKPVP  60
   61 SWREQLTVRA FVVGFLLSIM FNIIVMKLSL TTGVIPSLNV SASLLGFFLV RLWTAAIERV 120
  121 GFLKQPFTRQ ENTVIQTCVV SAYGVAFSGG FGSYLFGMSE TIAKQATEAN DPMNIKNPHL 180
  181 GWIIGFMFLV SFVGLFALVP MRKVMIVDYK LTYPSGTATA YLINGFHTPE GADLAKKQVR 240
  241 TLGKYFSISF LWAFFQWFYT AGDNCGFSSF PTFGLEAFKN RFYFDFSPTY VGVGMICPYI 300
  301 VNVSLLIGGI ISWGIMWPLI SKKKGSWYPE TLPESSLLGL QAYKTPETDM LRMMQVFITI 360
  361 AVILGDGLYN FVKVFGYTIK GFIVMYKNKN SNTLPISDNG TPANATEEES FDDKRRNELF 420
  421 LKDQIPKTVA IGGYVVLAVI TSGCLPLIIP QLKWYYILIA YIFAPIMAFC NAYGSGLTDW 480
  481 SLATTYGKLA IFVFGAWAGA SHGGVLVGLA ACGVMMNIVG TASDLMQDFK TGYMTLASPR 540
  541 SMFVSQVIGT AMGCVIAPCV FWLFYKSFNI GASDGAYPAP YTIMYRNMAI LGVNGLSSLP 600
  601 KYCLTLCYIA FVAAFIINLI KDLVPERVAK YIPIPMAAAI PFYLGPYFAI DMFMGSVILY 660
  661 FWEWRNKDEA QSFGPAVASG LMCGDGLWAL PQAVLSLVNV NPPLCMKFLS RAANAKVDTF 720
  721 LGCKFALTIL SSQIADLLLR SSYLVFDGSE YLSTPFGLGH LHASNRKNAG NNNVRSLFLE 780
  781 GVKTYLPPQL RSSVLPPSTG VPDLRPFRWG FPPSAATASI CPRARSQLGC DARRSEWERE 840
  841 MGADRRRIAG WSLGGGRGMV ASPISAPAPA RRPGGRWPAC EL