YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113564279, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGMGQQKRR PLVVMASAQA AARGGANPLA ELTDRVKTLE AGLRAWLAKQ PTHVEAAVAT  60
   61 AVGAVQGGAL GGLMGTLAPD GGSPFPVPQP PPGADPNALA SFKQAQALAG GPLVQARNFA 120
  121 VMTGANAGIS CVMRRIRGVE DVQGSAHFDS MAAAFGSGAL FSIVSGMGSP NPVANAITTG 180
  181 VAFAVFQGGF FMIGQKFSQP PSEDIYYSRG RNMLKQLGLQ NYEKNFKKGL LTDQTLPLLN 240
  241 DSALRDVKIP PGPRLLILDH IQRFGTAVQI SACWHQLFLK LHKIVFLEVQ SSYFKDELFR 300
  301 QKCDWKR

Type	Start	End	Confidence
Cytoplasmic	1	55	0.89
Transmembrane Helix	56	78	0.77
Non-Cytoplasmic	79	115	0.86
Transmembrane Helix	116	133	0.68
Cytoplasmic	134	145	0.64
Transmembrane Helix	146	166	0.86
Non-Cytoplasmic	167	172	0.67
Transmembrane Helix	173	194	0.86
Cytoplasmic	195	307	0.79