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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115445271, gi...
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQPRESDVP VLFVVFIVLP VIAYFLLGRW HDAVSKKARV SVLAQRAAEE TFKVETMATP  60
   61 DVILPGPSLR PMPYMRSAPS ARPEYHECAT CHGPAKTRCS RCKSVRYCSG KCQIIHWRQG 120
  121 HKQTCQQWNG FGTSSSGGLP PTENTEQMPF LSNLNSPLRG SDVHLHDMDF DTMSEPSFVT 180
  181 TDSYNLDTSP FLSDRSNMNK PNQFLHTSEN GAAIGSYEKN DYSIDGEVPS SEILSGNKGL 240
  241 NNSSGSGENC GNRDVIYPLN SVVHQPNNYA PEIRKRPKAS ITVYESDKGV YLTSDMISSG 300
  301 EGPYASAAES LQRSNSSGNV TGKGNMIHKK PPYPSGKVSS SQKSQEKVLT SHQYDGHEKN 360
  361 PHNKNEQRST KTAVSTNSSL QGCNGISKAG ASKVEALKKP SKFLKTSLVG LINDNKRSKV 420
  421 LFPYEDLVKF FQYEVRGISP RGLFNCGNSC YANAVLQCLM CTKPLMIYLL LRLHSKDCCS 480
  481 KNWCLMCELE QYASTLRESG GPVSPSRILS NLRNIGCRLG GGSQEDAHEF LRHLVMSMQG 540
  541 ACLDGLGGEK QVEASLQETT LIQQMFGGRL KSKVKCLRCY HESERYENIM DLTLEIHGWV 600
  601 ESLQDALTQF TAPEDLDGEN MYKCGRCSAY VKARKQLSVH EVPNILTVVL KRFQTGKYGK 660
  661 INKCVTFPDM LDMVPFVTGA GDNPPLYFLY AVVVHVDTEN ASFSGHYISY VKDMQGTWLR 720
  721 IDDSEVQAVS LNQVMSEGAY MLFYMRSFPR PPKIYIEKGL SSVPTCSKRH SSKSSKGSKQ 780
  781 DLNHTESLFA SSDQTYGIYD FRPDNGYIQD QHAALRTRNF YHTDDAFADS ISTDFSDATS 840
  841 SEWSLFTSSD ESSFTTESTR DSFSVVDYGD NAGLDPISSI FGPYYAQDHP PGSFASCTRL 900
  901 SPSNPQTRYF QENTGFVSDS SMPAHLPGNV HRGRYPDRAC SSSAEPPASA NPRSVYGRYG 960
  961 LSREGFVQTS GFCQM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle