YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115439883, gi...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLRLRSGR RRGESGGDQA GALILSWVDA NYRFVGSDTW SNVLRESWFF NNWKELLVPV  60
   61 SLSTFLLLGL KTPFSLPSTD SIQPSRPCGW LGVSTILGLM LEVSTSDPIF SILLLFHGYL 120
  121 DEQFCQVEDL QDEASPNFVE EVVTLFFKDS GRLMSNIEQA LEKYPRDFNR WDTYMQQLKG 180
  181 SCSSIGASRM KNECMSFRDS CGQGNVEGCM RSFQKVKREH AVLRQKLESY FQLLRQAGPA 240
  241 GAATRPVICV RVHGRKNRKA SLPTTASQRS RHVIQTPPNL RSNW

Type	Start	End	Confidence
Cytoplasmic	1	15	0.72
Transmembrane Helix	16	35	0.56
Non-Cytoplasmic	36	55	0.81
Transmembrane Helix	56	75	0.67
Cytoplasmic	76	87	0.57
Transmembrane Helix	88	105	0.57
Non-Cytoplasmic	106	284	0.89