YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90855440, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLALCTIN SSTRSIARLC RVSHSAHGTA DVHSFVARYS TLRNCSASLP RGKCSFIKTV  60
   61 TRQMCQSSPR RISLGRYGKG VFLAAGAAAV TGVLAAGVSH FQRAEMATKI PRVEEEDGDI 120
  121 RERCKSFMSP PVTDIKLLEQ RKDEMSTRME MLIMETQSAF CRALEQVDGG SFRVDRWSRK 180
  181 EGGGGISCVM QDGKIFEKAG VNVSVVYGNL TEEAARQMRS RGKILKGKDG KLPFRAMGVS 240
  241 SVIHPKNPHI PTVHFNYRYF EIEEADGTKQ WWFGGGTDLT PVYIDLEDAT HFHKTLKEAC 300
  301 DKHHPKYYPD FKKWCDNYFY IRHRGETRGI GGIFFDDLDS PDQDEVFNFV RSCAKTVVPC 360
  361 YLPIVYKHLN DSFTPEEKDW QQVRRGRYVE FNLVYDRGVK FGLATPGSRI ESILMSLPLT 420
  421 ARWEYMHEPT KGTKEAEMLE ILRNPKQWI

Type	Start	End	Confidence
Cytoplasmic	1	79	0.89
Transmembrane Helix	80	98	0.90
Non-Cytoplasmic	99	449	0.98