YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89111556, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFFVYISF LAYALVNVPV SIITILMNVF FVYCMFSSEK GQANSVKPPL NVLLWSLIGC  60
   61 SLLHNIFNLL FVLYELVYPP VWLYIISGAT ILFAMRTSFT ACLGLQICYF LQIVPVRWPC 120
  121 FIWMKKHIKL FMYVLLFLDR LYFLSQYVIR VFLEIRRVVM SFNSSSVYDN TTSQSADFGY 180
  181 YMFIADFWLK CCYFFICLGI MLTSGITTVV YLWKHMKRMK ENTSSLSALC KRQQMRVTIM 240
  241 GIIQTVLFFF ASGWLMTEEF IECYFGGYDV GTHLASTVMA LYSLGTTLLL GIGQSKFRLL 300
  301 AKDICKKTRK PKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	34	0.91
Cytoplasmic	35	51	0.88
Transmembrane Helix	52	73	0.92
Non-Cytoplasmic	74	88	0.71
Transmembrane Helix	89	110	0.86
Cytoplasmic	111	129	0.79
Transmembrane Helix	130	149	0.85
Non-Cytoplasmic	150	190	0.93
Transmembrane Helix	191	213	0.95
Cytoplasmic	214	234	0.94
Transmembrane Helix	235	256	0.92
Non-Cytoplasmic	257	272	0.90
Transmembrane Helix	273	293	0.91
Cytoplasmic	294	313	0.91