YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92110029, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGRLPAVL LLLALLLGGT AGPGAWAARS RGAEKQNSFR RAASGLYQGV SGLFGEDNVR  60
   61 ALQKFFSRLT ERFVNGVDVL MDTFWRIWTD LLDVLGIDAS NLTHYFSPAA IANNPTRAIL 120
  121 LIGAILLAYW FLSLFLGFFF YLLHMIFGRF FWIARVALFT LSCIYILQKY EGDPEHAVLP 180
  181 LCFVVAVYFM TGPVGFYWRR NSSSSLEEKM DHLDSQIRLL NIRLSRVIEN LDRGSDQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	117	0.99
Transmembrane Helix	118	142	0.89
Cytoplasmic	143	150	0.79
Transmembrane Helix	151	168	0.97
Non-Cytoplasmic	169	176	0.81
Transmembrane Helix	177	198	0.95
Cytoplasmic	199	237	0.97