YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGAP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQVPLTLDR DGTLVRLRFT MVALITVCCP LVAFFFCILW SLLFHFKETT STHCGVPNYL  60
   61 PSVSSAIGGE VPQRYVWRFC IGLHSAPRFL TAFAYWNHYL SCASPCPGYR LLCRLNFSLN 120
  121 VVENLALLVL TYVSSSEDFT IHENAFIVFI AASLSYMLLT CILWRLTKKH TVSQEDRKSY 180
  181 SWKQRLFIIN FISFFSALAV YFRHNMYCEA GVYTIFAILE YTVVLTNMAF HMTAWWDFGN 240
  241 KELLITSQPE EKRF

Type	Start	End	Confidence
Cytoplasmic	1	19	0.81
Transmembrane Helix	20	43	0.91
Non-Cytoplasmic	44	79	0.77
Transmembrane Helix	80	99	0.56
Cytoplasmic	100	111	0.60
Transmembrane Helix	112	133	0.62
Non-Cytoplasmic	134	144	0.83
Transmembrane Helix	145	166	0.94
Cytoplasmic	167	185	0.93
Transmembrane Helix	186	204	0.94
Non-Cytoplasmic	205	211	0.81
Transmembrane Helix	212	235	0.85
Cytoplasmic	236	254	0.94