YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83767260
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGSSVSL MRSFTPRLSK EFFTCRQCLG RSQNYATKST FRKNFAVSPF TQNTSKLNTP  60
   61 ASFPKTKSAI PNIFRRSASG SAAANAVEEG ASNAKSSFPK VSDKTVAYWL LGSAASVFGI 120
  121 VVFGGLTRLT ESGLSITEWR PVTGSLPPMN AEDWESEFAK YRASPEFQLL NPHMTLSEFK 180
  181 SIYYMEWIHR LWGRFVGLSF VLPALYFVAR KKVSKPMALR LGGIAGLIGF QGFIGWWMVK 240
  241 SGLKDDLFAP GSHPRVSQYR LTAHLGAAFV CYVAMLWNGL AILRSHRLLA DPEAGIKLLD 300
  301 SLRDPKLKIF RRSVAGLAAL VFVTAMSGAL VAGLDAGLIY NEFPFMGTGL APPKSELFDE 360
  361 RYSRHEDRSD LWWRNMLENP SLVQLDHRIL AMTTFTTIMA LWAYTRRSPT MKRLLPPAAK 420
  421 KGVHGVVAFA FCQVGLGIST LLYLVPTPLA SAHQAGSLFL LTWVLVLGSR VWHPSRTAKL 480
  481 LQMAVKARGQ AISSATAHGP RNL

Type	Start	End	Confidence
Cytoplasmic	1	104	0.99
Transmembrane Helix	105	127	0.92
Non-Cytoplasmic	128	190	0.96
Transmembrane Helix	191	209	0.96
Cytoplasmic	210	217	0.90
Transmembrane Helix	218	239	0.93
Non-Cytoplasmic	240	260	0.94
Transmembrane Helix	261	281	0.93
Cytoplasmic	282	313	0.95
Transmembrane Helix	314	339	0.86
Non-Cytoplasmic	340	384	0.98
Transmembrane Helix	385	405	0.91
Cytoplasmic	406	422	0.95
Transmembrane Helix	423	445	0.92
Non-Cytoplasmic	446	451	0.82
Transmembrane Helix	452	473	0.91
Cytoplasmic	474	503	0.98