YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169769709
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQSTVYPS EAPSQIRIFT LNCWGLKYLA KYRHERLSEI GRQLALADPA PEIVGLQECW  60
   61 TQQDYESIRE QTRHLLPYGK FYFGGVMGAG LAILSKWPIE ESSMYGYPLN GRPTAFFRGD 120
  121 WYVGKGVACA RVRFGPGASD VAEVFCTHLH APYEKEPNDS YICHRTAQAW EIAKLMRGAA 180
  181 ERGHLAIGLG DFNMVPSSFA HQLIRAHSPV QDVWQAIYPD SSVAAPIDPI EQKRGKPTPS 240
  241 AEFNLHVNGA TCDGKFNTWR WTKEERKRLE KGEEIAVDKD APCPRGKRLD YIFVGDGGYP 300
  301 PAFPAPQWSV ESVNIGMTQR HPTLRCSLSD HFAVEATITR SPRPSEADNL TDNKLRQSVV 360
  361 PNTALSPDTY DRIIDMIHTY VQRERSQRRW RLAHFIISVF VSIGCFVGVW WTGDLPYVAF 420
  421 ILVLVSTLSF GAGILDGLIG GLFMSSELRA LKEFEWEVRN AKELVEKSGG TGQKLE

Type	Start	End	Confidence
Cytoplasmic	1	391	0.87
Transmembrane Helix	392	412	0.95
Non-Cytoplasmic	413	418	0.79
Transmembrane Helix	419	443	0.90
Cytoplasmic	444	476	0.94